Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3056g00041 ATGGAGCACAATTCGGGTTATTCAAGGATGTTCTTTTTATTTCTCCTTGGTTCGACTTCCTTCATTTTACTCTCACACTTGGCTTCTGCAGCCACACCTAAGCTCAACTCTGAAGAGGTGAAGGCATTGAAAGAGATAGGGAGGAAAATTGGGAAGAAAGATTGGGACTTTGGGGTGGACCCTTGCAGTGGAAAAGGGAACTGGAATGGGTCTGATAATAATAGGAAAGGCTTTGAGAGTTCTGTGATGTGTGATTGTTCCTTCAATCACAATTCTTCTTGCCATGTTGTAAGCATATCCTTGAAGGCTCAGAATCTGTCTGGTACTCTCTCATCAGAGTTTTCAAAGCTTCGTTATCTTAAACTATTGGACCTTAGTCGTAACATCATCACTGGTTCTATACCTCAACAATGGGCTACCATGCGCTTAGTTGAGATCTCTTTCATGGGAAACAGATTGTCAGGGCCATTTCCCACAGTTCTAACCAATATCACAACCCTCAAAAACCTGAGTATTGAAGGAAATCTATTTTCAGGCTTCATTCCAACAGAGATTGAAAAGTTGATCAATTTAGAAAAACTCATTCTATCATCAAATGCATTCACTGGAGCATTTCCATCCGCACTTTCCAAGTTGACCAAGTTGACTGATTTGAGGATAGGCGACAATAATTTCTTTGGGACGATACCTGATTTCATTAGTAAATTGACACTGATTGAAAAGCTGCACATTCATGGTTGCTCTCTTGAGGGCCCCATACCTTCTAGCATTTCTGCCTTGACAAGATTAACCGATTTGAGAATAACTGACCTGAAAGGCAATAGAAGCTCTGCTTTCCCACCACTAAGTAATATGAAATCCATGAAGACACTGATACTGAGAAAATGCTTGATTAAAGGAGAGATCCCGGAATATATTGGGAGAATGGAAAAACTGAAAATCTTAGATTTGAGTTTCAATGGCTTGAGTGGAAAGATACCTGGATCTTTTAACCAACTTGACAAAGTGGACTACATGTATCTTATTGGGAACAAGCTGACAGGGTCTATACCTGGTTGGGTCCTTGCGATTAACAAAAATATTGATTTCTCTTACAATAACTTCGCCTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAATGTAAACCTTGTCGAGAGCTACTCCTCATCTGCGGATCCACAAAGTAAGATTCATTCATGCCTAAAAAGAAACTTTCCATGCCCTGCTTCGGTTAGCAAATATCATTACTCCATGCACATTAATTGTGGTGGTAATGAAGCAAATATTAGTGGTAATATTTATGAAGCTGATAGAGAACAAAAAGGTGCTTCAATGTTATATTACCCTGGTCAGGATTGGGCTCTTAGTAGCACTGGGAACTTCATGGACAATGATATTGACTCTGATTCCTATATTGTGGTCAATACTTCTAGACTTAATAGTGTCTCGGTACTCAATTCAGAACTGTACACAACAGCTCGTGTTTCTCCGCTTGCTCTCACATATTATGGCCTCTGTCTAATAAACGGAAATTACACTGTTAAGCTCCACTTTGCAGAAATTATTTACATAAATGATAGGTCATATAACAGTCTTGGCAGGCGGGTATTTGATGTCTACGTCCAGGGGGAATTGGTGCTGAAAGACTTTAATATCCAAAACGAAGCTGGTGGTACTGGCAAGCCAATTGTGAAGACATTTAATGCTACTGTCACACAACATACTTTGAAGATTCACTTTTATTGGGCTGGAAAGGGAACCACTGGCATACCCACAAGAGGAGTTTATGGACCTTTAGTATCTGCTATTTCAGTAGACCCTAATTTTAAACCTCCCTCTGAGGATGGCTACAGAACTTATGTCATACTGGCAGTTGGCGTAGTCGCAGGTGTTGTAGTTGTTCTTATGGTGCTAGCTATCGTGTGGGGAATGGGATGGTTAGGAGGCAAGGACCCAGTGTATAAAGAGCTTAAGGGTATAGATCTGCAAATGGGATTATTTACTTTAAGACAAATCAAAGCAGCAACCAAAAACTTTGATGCAGCATACAAAATTGGCGAAGGTGGCTTTGGTTCTGTTTACAAGGGACTACTATCAGATGGTACAGTAATTGCGGTAAAGCAGCTCTCTTCAAAATCTAAGCAAGGAAACCGTGAGTTTGTGAATGAGATAGGAATGCTATCTGGACTTCAGCATCCCAATCTTGTTAAGCTTCATGGATGTTGTGTGGAGGGAAACCAGCTAATACTGATATATGAGTATATGGAAAATAATTGTCTATCTCGCATTCTTTTTGGAAAGGATCCAAACAGAAGAACGAAACTAGACTGGCCAACCAGGAAGAATATTTGCCTTGGCATAGCTAGAGCTCTGGCTTATCTCCATGAAGAGTCCAGAATAAAAATCATTCACCGGGATATAAAAACAAGTAATGTGTTGCTCGACAAGGATTTTAATGCTAAAGTTTCGGATTTTGGCTTAGCAAAACTTATTGAAGATGACAAAACTCATGTTAGCACTCGAATTGCAGGAACAATTGGTTATATGGCTCCTGAGTATGCAATGCGTGGCTATTTAACTGATAAAGCAGATGTTTATAGTTTTGGGGTAGTTGCATTGGAAACTGTCAGCGGAAAGAGCAATACAAATTACATGCCGAACGAGGAATTTGTTTATCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGAAATCTTCTGGAGCTGGTTGATCCAGGTTTGAGTTCAGAATATTCAACTGAGGAGGTCATGGTGATGCTAAATGTGGCTCTTTTATGTACTAATGCATCTCCTACCCTAAGGCCAACAATGTCCCAAGTCGTGAGCATGCTTGAAGGTTGGACTGACATTCATGATCTACTTTCTGATCCGGGATATTCAGCTCCTAGTTCCAATTCCAAATATAAAAGTATTCACTTCTGGCAGAATCCAAGTAGAACACAAAGCATGTCACTACATAGTACATATACTGATTCCTCTACCTCACGTGTTGATATAGAAGAGAGCTACCGTCTCGTAACAATTACACCGGATGGACCAAACATTAGATAG 3078 0.4025 MEHNSGYSRMFFLFLLGSTSFILLSHLASAATPKLNSEEVKALKEIGRKIGKKDWDFGVDPCSGKGNWNGSDNNRKGFESSVMCDCSFNHNSSCHVVSISLKAQNLSGTLSSEFSKLRYLKLLDLSRNIITGSIPQQWATMRLVEISFMGNRLSGPFPTVLTNITTLKNLSIEGNLFSGFIPTEIEKLINLEKLILSSNAFTGAFPSALSKLTKLTDLRIGDNNFFGTIPDFISKLTLIEKLHIHGCSLEGPIPSSISALTRLTDLRITDLKGNRSSAFPPLSNMKSMKTLILRKCLIKGEIPEYIGRMEKLKILDLSFNGLSGKIPGSFNQLDKVDYMYLIGNKLTGSIPGWVLAINKNIDFSYNNFAWDSSSPTECQRGNVNLVESYSSSADPQSKIHSCLKRNFPCPASVSKYHYSMHINCGGNEANISGNIYEADREQKGASMLYYPGQDWALSSTGNFMDNDIDSDSYIVVNTSRLNSVSVLNSELYTTARVSPLALTYYGLCLINGNYTVKLHFAEIIYINDRSYNSLGRRVFDVYVQGELVLKDFNIQNEAGGTGKPIVKTFNATVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISVDPNFKPPSEDGYRTYVILAVGVVAGVVVVLMVLAIVWGMGWLGGKDPVYKELKGIDLQMGLFTLRQIKAATKNFDAAYKIGEGGFGSVYKGLLSDGTVIAVKQLSSKSKQGNREFVNEIGMLSGLQHPNLVKLHGCCVEGNQLILIYEYMENNCLSRILFGKDPNRRTKLDWPTRKNICLGIARALAYLHEESRIKIIHRDIKTSNVLLDKDFNAKVSDFGLAKLIEDDKTHVSTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETVSGKSNTNYMPNEEFVYLLDWAYVLQERGNLLELVDPGLSSEYSTEEVMVMLNVALLCTNASPTLRPTMSQVVSMLEGWTDIHDLLSDPGYSAPSSNSKYKSIHFWQNPSRTQSMSLHSTYTDSSTSRVDIEESYRLVTITPDGPNIR 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3056g00041 1025 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 981 - -
Gabi3056g00041 1025 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 651 756 - -
Gabi3056g00041 1025 Gene3D Ribonuclease Inhibitor 165 235 IPR032675 -
Gabi3056g00041 1025 Gene3D Ribonuclease Inhibitor 52 164 IPR032675 -
Gabi3056g00041 1025 CDD STKc_IRAK 687 955 - -
Gabi3056g00041 1025 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 236 384 - -
Gabi3056g00041 1025 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524
Gabi3056g00041 1025 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 417 610 - -
Gabi3056g00041 1025 SUPERFAMILY L domain-like 83 368 - -
Gabi3056g00041 1025 SMART serkin_6 681 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3056g00041 1025 Pfam Malectin domain 419 605 IPR021720 -
Gabi3056g00041 1025 Gene3D Transferase(Phosphotransferase) domain 1 757 964 - -
Gabi3056g00041 1025 FunFam Putative LRR receptor-like serine/threonine-protein kinase 757 965 - -
Gabi3056g00041 1025 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 41 205 - -
Gabi3056g00041 1025 Gene3D Phosphorylase Kinase; domain 1 654 756 - -
Gabi3056g00041 1025 SUPERFAMILY Protein kinase-like (PK-like) 664 985 IPR011009 -
Gabi3056g00041 1025 Pfam Leucine Rich Repeat 311 331 IPR001611 GO:0005515
Gabi3056g00041 1025 Gene3D Ribonuclease Inhibitor 236 380 IPR032675 -
Gabi3056g00041 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Gabi3056g00041 1025 Gene3D - 416 609 - -
Gabi3056g00041 1025 Pfam Protein tyrosine and serine/threonine kinase 685 953 IPR001245 GO:0004672|GO:0006468
Gabi3056g00041 1025 ProSiteProfiles Protein kinase domain profile. 681 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3056g00041 Gabi-Chr3056 313067 323279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3056g00041 218 1015 Receptor kinase-like Gene Family AT1G07650 64.851 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3056g00041 PK_Tyr_Ser-Thr 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3056g00041 - - gmx:100784864 1687.93