Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3056g00038 ATGGGGAAAAATGAATTTCTCACACCTAAAGCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTAGATGGTATTGTCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGGTTTAAATGCCACTGCATGAGTGAAGGACACCAGCGTCAAATGCAAATTTTTGGACAAAACCCACATCGGATAGTTGACGGCTATACTGAAGAGTTTGAAAGTTCTTTTCTGGAGCACATGAAGCGCAGCCACCGATTCAGCCGTGTGGCTGCCACTGTAGTTTATAATGAATACATAAACGATAGACACCATGTTCATATGAACTCCACTCAGTGGGCTACGCTTACTGAGTTTGTAAAGTACTTGGGTCGAACTGGCAAGTGTAAGGTTGATGAAACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGTAGACGAAGAAAAGCAAGAGAAGGAGATCAGGAAACAGATTGAAAAGGCTGAGCAATTGATGCAGCTACCTACTCCCGAGTCTGATCAGCCTTCACAGGTTGAGCCTCCGAGGGAACTAAATGTGGATGATGGAGTTAAGATAGGATTTTCTCTTGGGTCATCAGCTAGGCCTGTGACCAAGGAAAAACGTGAGGCATCGAGGGTGGTGTTTGATGATGAAGAGAAATATGAGGAAAGGAATTCTGTAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAGCTTTGGATGAAATGATGAGGGATGAAGAGAAGAAAAAGGAAAAAATTAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTCTTGGCAGAGAAAGGGTACTACAAGCAAAAGGGCATTGTGCGAAAGGTGATTGACAAGTATGTTGGCGAAATAGAAATGCTTGAAAGCAAGCATGTACTCAGAGTTGATCAGGCAGAGCTTGAGACTGTGATTCCACAAGTTGGGTGCCGTGTAAAAATAGTCAATGGGGCATATCGTGGATCAATTGCTCGGCTGTTGGGGGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATAGAGAAAGGTCCCTATGATGGCAGGGTACTTAAAGCTATGGAATATGAGGACATCTGTAAAATAGCCCAGTGA 1191 0.4265 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVDGYTEEFESSFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVDETPKGWFITYIDRDSETLFKERMKNKRIKADMVDEEKQEKEIRKQIEKAEQLMQLPTPESDQPSQVEPPRELNVDDGVKIGFSLGSSARPVTKEKREASRVVFDDEEKYEERNSVNNLKRKESGGGKSALDEMMRDEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGIVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGCRVKIVNGAYRGSIARLLGVDTDNFCAKVQIEKGPYDGRVLKAMEYEDICKIAQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3056g00038 396 Coils Coil 258 278 - -
Gabi3056g00038 396 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 394 IPR037321 -
Gabi3056g00038 396 Gene3D - 60 160 IPR038254 -
Gabi3056g00038 396 Gene3D - 339 395 IPR014722 -
Gabi3056g00038 396 Coils Coil 156 186 - -
Gabi3056g00038 396 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Gabi3056g00038 396 SMART Kin17_mid_2 52 178 IPR019447 -
Gabi3056g00038 396 Gene3D - 285 338 - -
Gabi3056g00038 396 Pfam KN17 SH3-like C-terminal domain 277 330 IPR041330 -
Gabi3056g00038 396 CDD KOW_KIN17 341 394 IPR041995 -
Gabi3056g00038 396 FunFam DNA/RNA-binding protein kin17-like 285 338 - -
Gabi3056g00038 396 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Gabi3056g00038 396 FunFam DNA/RNA-binding protein KIN17, putative 339 395 - -
Gabi3056g00038 396 MobiDBLite consensus disorder prediction 249 269 - -
Gabi3056g00038 396 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3056g00038 Gabi-Chr3056 267231 273749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3056g00038 1 395 C2H2 Transcription Factor Family AT1G55460 69.639 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3056g00038 K13102 - gmx:100785931 724.931