Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3056g00015 ATGAGCTTCTTTTCATGTTGTACGTCACAAAAGATCAACAAAGAGTCATTGAAGAAGAGCATTAAGGAATACCATGATGCAAAAACTGATCAAACTTCATTTGATAATGTCTGTTTTAAAACTGATAGCAGCAAGCGGGAGTACATTGAAGAAGAAATGGGAAAAATTGGAAAAGGAAAAAATACCTCTCAGATTTTTTCTTATCATGAACTATGTGTTGTAACTCAGAACTTTAACCCTCACAATATGATTGGTGAAGGAGGATTTGGGAGGGTATACAAAGGACGCATTAAAAGCAAAAATCAGGTTGTTGCTGTGAAGCAACTTAACAGGGAAGGATTCCAAGGAAACAGGGAATTTATTGCAGAGGTTTTGATTTTGAGTCTCTTGCACCACCCTAACCTTGTCAATTTAGTAGGGTATTGTGCTGATGGTGATCAAAGGATTTTGGTATACGAGTACATGGTGAATGGTTCTTTAGAAGATCACCTTCTCGAACGACCTCCGGACAGAAAGCCCTTGGACTGGCGTACTAGGATGAAAATAGCAGAAGGTGCAGCAAAAGGACTTGAATATTTGCATGATGTAGCAAATCCACCAGTTATATATCGTGACTTCAAAGCATCAAACATACTATTAGATGAAAACTTCAGTCCAAAACTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGTGATAAAACACATGTATCAACCAGGGTGATGGGAACTTATGGCTACTGTGCCCCTGAGTATGCCTCAACAGGTCAATTGTCTACAAAATCAGATGTATACAGCTTTGGAGTAGTGTTTCTAGAGATAATCACAGGAAGAAGAGTACTTGATTATTCAAGACCATCAGAAGAACAAAACTTAGTCACTTGGGCACAACCACTATTCAAAGACAAAAGGAATTTCACATTTATGGCTGATCCATTACTAGAAGGAAACTACCCAAAAAAGGGTCTAGACCAAGCACTAGCAGTTGCAGCAATGTGTCTTCAAGAGGAAGCTGATACCAGGCCTTTGATTAGTGATGTAGTTACAGCTCTTGATGTTTTAGCAAAGCAGCATGTACAAGTGGCTAAACAAAAAAATACACAGGAGACTTATTTTCAGAGCAGAGAATGCAGTTGA 1140 0.3886 MSFFSCCTSQKINKESLKKSIKEYHDAKTDQTSFDNVCFKTDSSKREYIEEEMGKIGKGKNTSQIFSYHELCVVTQNFNPHNMIGEGGFGRVYKGRIKSKNQVVAVKQLNREGFQGNREFIAEVLILSLLHHPNLVNLVGYCADGDQRILVYEYMVNGSLEDHLLERPPDRKPLDWRTRMKIAEGAAKGLEYLHDVANPPVIYRDFKASNILLDENFSPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLSTKSDVYSFGVVFLEIITGRRVLDYSRPSEEQNLVTWAQPLFKDKRNFTFMADPLLEGNYPKKGLDQALAVAAMCLQEEADTRPLISDVVTALDVLAKQHVQVAKQKNTQETYFQSRECS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3056g00015 379 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Gabi3056g00015 379 Gene3D Phosphorylase Kinase; domain 1 47 154 - -
Gabi3056g00015 379 Gene3D Transferase(Phosphotransferase) domain 1 155 378 - -
Gabi3056g00015 379 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3056g00015 379 SUPERFAMILY Protein kinase-like (PK-like) 64 360 IPR011009 -
Gabi3056g00015 379 CDD STKc_IRAK 84 353 - -
Gabi3056g00015 379 PANTHER OS07G0668900 PROTEIN 21 364 - -
Gabi3056g00015 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gabi3056g00015 379 FunFam Serine/threonine-protein kinase PBS1 155 371 - -
Gabi3056g00015 379 Pfam Protein kinase domain 81 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3056g00015 379 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3056g00015 Gabi-Chr3056 127900 130233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3056g00015 62 356 Glycoside Hydrolase AT3G07070 71.186 1.85e-158 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi3056g00015 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3056g00015 - - gmx:100798032 643.269