Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00042 ATGGGTCAGTGCTACGGCAAGGCCAATCCGGCGACGGAAAATGAAAACACCACCACCACCACCACCACAATCGCAGATTCCGGTGACGGAGACGGCTACCTCCCGCCGTCATCCGCCGCAGTGAGCGCGTTTCCATCGGTGAAGAACACGCCGGCTCGGAGTCCCTGGCCCAGCCCTTACCCGCAAGGTGGTGGCGTTGGCGGGGTGACGCCGTCGCCGGCGAGAGGCACGGCGACGCCGAGGAGGTTTTTCCGGCGGCCGTTTCCGCCGCCTTCGCCTGCGAAGCATATAAGGGCGTCGCTGGCGAAGCGGCTCGGGCACCTGAATCCGCCGCCGAAGGAGGGGCCGATCCCGGAGGAGGAGCAGGTGTTGGATAAGAGCTTTGGTTATAGCAAGAATTTTGGGGCAAAATATGAGCTTGGGAAGGAAGTGGGTAAAGGGCATTTTGGTCATACTTGCTATGCCAAGGGTAAAAAGGGTGACCTCAAAGATCAACCTGTTGCTGTTAAAATCATTTCCAAGGCCAAGATGACCACAGCAATAGCAATTGAAGATGTTCGGAGAGAGGTGAAGATATTAAAAGCTCTATCTGGCCATGAGCATCTCATCAAATTTCATGATGCTTTTGAGGATTCCAACAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGGAAGTATACAGAGGAGGATGCTAAGGTTATAGTTTTGCAGATTCTAAGCGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTTCACCGTGACCTGAAACCTGAGAATTTCCTCTTCACTTCAAAAAGTGAAGATGCTGACATGAAGCTTATTGATTTTGGTCTATCTGACTTCATTCGGCCGGATGAACGGCTGAATGACATTGTGGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGATCATATAGTATGGAAGCTGATATATGGAGTATTGGTGTCATTACCTATATCTTGCTATGTGGAAGTCGACCTTTCTGGGCACGAACGGAATCTGGAATTTTTCGTGCAGTGCTCAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCTTGTGCCTCTGCAGAGGCCAAGGACTTCGTTAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGTCCAAGCTCTAACTCACCCTTGGTTGCGGGATGACAGCCGTGCCATCCCTTTGGATATTTTAGTTTATAAACTAGTGAAGGCTTATCTTCATGCGACACCATTCAAACGTGCAGCTGTGAAGGCCCTTTCAAAAGCCTTGACAGAGGATGAATTGCCCTATCTTAGAGCTCAATTCAGATTGTTGGAACCAAATAGAGAGGGGCACATCTCCCTTGACAATTTCAAAATGGCTCTTGCACGCCATGCAACTGATGCCATGGGGGAGTCAAGGGTTCTTGATATCATACATGCGATGGAACCACTTGCCTATAGAAAGATGGACTTTGAAGAATTTTGTGCAGCTGCAATTAGCACATATCAATTGGAGGCACTTGATAGGTGGGAAGATATTGCTTCCACTGCTTTTGAACATTTTGAGAGAGAGGGCAACCGTCTGATATCGGTTGAAGAATTAGCAAGAGAGTTGAATCTTGGTCCTTCAGCTTTTTCAATTCTCAGAGATTGGATACGAAATACTGATGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTGCATGGTGTGACTATCCGTAGTTCAAACCCGAGACAACGTTAG 1773 0.4755 MGQCYGKANPATENENTTTTTTTIADSGDGDGYLPPSSAAVSAFPSVKNTPARSPWPSPYPQGGGVGGVTPSPARGTATPRRFFRRPFPPPSPAKHIRASLAKRLGHLNPPPKEGPIPEEEQVLDKSFGYSKNFGAKYELGKEVGKGHFGHTCYAKGKKGDLKDQPVAVKIISKAKMTTAIAIEDVRREVKILKALSGHEHLIKFHDAFEDSNNVYIVMELCEGGELLDRILSRGGKYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSKSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSMEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPCASAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRAIPLDILVYKLVKAYLHATPFKRAAVKALSKALTEDELPYLRAQFRLLEPNREGHISLDNFKMALARHATDAMGESRVLDIIHAMEPLAYRKMDFEEFCAAAISTYQLEALDRWEDIASTAFEHFEREGNRLISVEELARELNLGPSAFSILRDWIRNTDGKLSLLGYTKFLHGVTIRSSNPRQR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00042 590 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Gabi3055g00042 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gabi3055g00042 590 MobiDBLite consensus disorder prediction 9 27 - -
Gabi3055g00042 590 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Gabi3055g00042 590 PANTHER SERINE/THREONINE-PROTEIN KINASE 122 565 - -
Gabi3055g00042 590 Pfam Protein kinase domain 138 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3055g00042 590 FunFam CDPK-related kinase 1 436 508 - -
Gabi3055g00042 590 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Gabi3055g00042 590 SUPERFAMILY EF-hand 426 579 IPR011992 -
Gabi3055g00042 590 FunFam CDPK-related kinase 3 130 302 - -
Gabi3055g00042 590 FunFam CDPK-related kinase 1 131 226 - -
Gabi3055g00042 590 SUPERFAMILY Protein kinase-like (PK-like) 132 416 IPR011009 -
Gabi3055g00042 590 Gene3D - 409 580 - -
Gabi3055g00042 590 CDD STKc_CAMK 137 399 - -
Gabi3055g00042 590 ProSiteProfiles Protein kinase domain profile. 138 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3055g00042 590 Gene3D Transferase(Phosphotransferase) domain 1 227 408 - -
Gabi3055g00042 590 MobiDBLite consensus disorder prediction 1 95 - -
Gabi3055g00042 590 SMART serkin_6 138 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3055g00042 590 FunFam Calcium-dependent protein kinase SK5 310 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00042 Gabi-Chr3055 447181 455271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00042 21 584 EF-hand Containing Proteins AT3G50530 61.424 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3055g00042 Pkinase 2.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00042 K13412 - gmx:100796256 999.193