Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00039 ATGTTAGACAATATGGAATATACTTTTTCAGCAGAAGCTGCAGAGGCAGAAGCTTACACCACTAGCAGCACAACTCCACCAGGTGCCATAAGAAAGAAGAAAAACAAAAACACAAGAAGGTTCAGTGATGAACAAATCAAATCATTGGAAACTATGTTTGAGACAGAATCAAGGCTTGAACCTAGAAAGAAGTTGCAGGTTGCTAGAGAGCTTGGATTGCAGCCACGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTTGAGAGAGACTATAGCATTCTTCAAGCCAATTATAACAATTTGGCTTCAAGATTTGAAGCACTGAAGAAGGAGAAGCAAACATTACGAACACAGTTGCAGAAGCTGAATGATCTACTACAGAAGCCACTAGAGCAAATTCAAAGTTCTACACAAGTTAAAGTAGCAAACAGCATGGACAGTGAATCAGAAGCCACCATCAATTGTAGTGAACCTGAGGTAAAGCCAAGCCCATCAATGGAAAGATCAGAACATGTACTTGATGTTCCCTCTGATGATGACTCCAGCATAAAGGTAGAATACTTTGGCTTGGAAGATGAACCTGGTCTTCTGAATTTTGTTGAGCATGCTGATGGTTCCTTGACATCTTCAGAAGATTGGGGTACTTTTGATTCCAATGATCTGTTAGGCCAGTCAACCAGTGATTATCAATGGTGGGACTTCTGGTCCTGA 732 0.4098 MLDNMEYTFSAEAAEAEAYTTSSTTPPGAIRKKKNKNTRRFSDEQIKSLETMFETESRLEPRKKLQVARELGLQPRQVAIWFQNKRARWKSKQLERDYSILQANYNNLASRFEALKKEKQTLRTQLQKLNDLLQKPLEQIQSSTQVKVANSMDSESEATINCSEPEVKPSPSMERSEHVLDVPSDDDSSIKVEYFGLEDEPGLLNFVEHADGSLTSSEDWGTFDSNDLLGQSTSDYQWWDFWS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00039 243 MobiDBLite consensus disorder prediction 154 185 - -
Gabi3055g00039 243 SUPERFAMILY Homeodomain-like 20 94 IPR009057 -
Gabi3055g00039 243 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Gabi3055g00039 243 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Gabi3055g00039 243 MobiDBLite consensus disorder prediction 16 41 - -
Gabi3055g00039 243 SMART HOX_1 35 96 IPR001356 GO:0003677
Gabi3055g00039 243 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Gabi3055g00039 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 33 170 IPR045224 GO:0003700
Gabi3055g00039 243 MobiDBLite consensus disorder prediction 16 31 - -
Gabi3055g00039 243 CDD homeodomain 36 93 IPR001356 GO:0003677
Gabi3055g00039 243 Pfam Homeobox associated leucine zipper 92 134 IPR003106 GO:0006355|GO:0043565
Gabi3055g00039 243 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Gabi3055g00039 243 MobiDBLite consensus disorder prediction 170 185 - -
Gabi3055g00039 243 FunFam Homeobox-leucine zipper protein ATHB-7 19 92 - -
Gabi3055g00039 243 Pfam Homeodomain 39 90 IPR001356 GO:0003677
Gabi3055g00039 243 Gene3D - 19 95 - -
Gabi3055g00039 243 Coils Coil 84 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00039 Gabi-Chr3055 353210 354838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00039 40 243 Homeobox Transcription Factor Family AT3G61890 56.731 4.18e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3055g00039 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00039 K09338 - gmx:100797862 348.977