Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00023 ATGATGGTTCTAGATATGTTCACTTCTGGTCCTACCACAGAAGCCATTTCTCAAATCATAGATATAATTTCTGAGTTCCTATTTTATGCTAGTGATGTCCTTGTGAAGAAGGATAGTTTTAAGGATTTTGCATCTTACATGGAAAGAATTATGCCTATCTTAAAAGAATTGAAGAAAGAAAAAGTCAGTGATTCTGAGACATTCAACAGTGCCATTGAGGTTATGAATCGTGAAGTTAAACATGCAAAGCAACTGGCGCAAGAATGCAGCAAGAGGAGCAAAGTTTATCTCCTAATGAACTGCAGGTCCATTGTTAAGCGCTTAGAAAACCACACAAAGGAGATAAGCAGGGCACTTAGTCTTCTTCCTTTAGCCACATCAGGTCTTTCTTCAGGAATAATTGAAGAGATTGAAAAGCTATGTGACAATATGCAAAAAGCTGGGTTTGAGGCAGCTTTAGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTTGATAGCTCTTATGCCAATAATTTGCTGATTCTCATTGCAGAAGCTGTTGGGATTAGAAATGAGAGATCAATAATGAAGAAAGAACTTGATGAGTTTAAGAATGAAATTGAAAATGCCCGCGTTAGGAAGGACTTGGCTGAAGCTCTACAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGCAGCATCATCACCTAGGGAAAAGGAACTCAAATACTTTGCCAAACGCCAGTCGTTGGGTACTCAAATCCTGGAGCCTTTACAGTCATTTTATTGCCCCATCACCCAAGATGTTATGGTGGACCCTGTAGAAACTTCATCAGGGCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCAGAAGGAAACAAATTGTGTCCCCTGACCTTGATTCCTTTAGACACATCAATTTTGAGACCTAACAGAACTTTGAAACAATCCATAGAAGAATGGAAGGATAGAAATACAATGATTACAATTGCTACACTGAAAGAAAAGATACAGTCTGGAGATGATAATGAAGTGCTCCACAGTCTGGGAACTCTCCAGGATTTGTGTGAACAAAAAGACCAACACAGGAAATGGGTGATACTGGAGAATTACATACCAGCTCTTATCCAAATTCTTGGTTCAAAAAACCGTGATATAAGGAATTATGCTCTTGTCATCCTTTCCATGCTGGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTGCAACCGTTGATAATGCAATCGAATCAATTGTCCATTCTCTTGGACGTCGTCAAGGGGAAAGGAAGTTTGCAGTGGCTTTACTGCTCGAATTATGCAAATATGATTTGGCACGAGAAAACATTGGAAAAGCTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCCAGAGATGCAACGGAGCTATTGGAGAACCTTTCATACTCAGATCATAATGTTATACAGATGGCAAAGACAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTAAAGATGGTTATGGCCACAACTTTAGCAGAAATGGAGTTAACTGACCACAATAAGGAGTCCTTGTTTGATGGTGGTGTGCTGCCTCCTCTTCTTTACTTGGTCTCACATAATGATCTTCAGGTGAAAACAGAGGCCATCAAAGCTCTTCGGAATCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTGGTCGAGGGGCTGTGCGACCATTACTTGACCTCCTTTTCCATCGCAGCATACAAACCTCAAGTTTGTGGAAAGACGTAGCTGCCATAATTAAGCTACTTGCTGAATCAACTATCTCTCAAGAAGATGCTCAAACACCAGTTTTATTACTAGAAGTTGATGATGATGTTTTTAACCTCTTCTCTTTAATTAGTGTCACACCGCCTGATGTGCAACAAAACATTATCCAGACCTTTCATGCCTTGTGTCAGTCACCCTCGGCTTCATATATCAGGACCAAGCTAAAAGAGTGCTCAGCTGTTCCAGACTTGGTTCAATTGTGTGAGAACGAAAACCAAAACCTGCGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGATGAAGCCATCATACTGGAGAATGTTGATCAGAAATGCATCAATACTTTACTCCGGATCCTGAAATCTTCATCTGATGAAGAGGAAATACTTTCTGCTATGGGAATAATATGCCATCTTCCAGAAATTCACGAGATAAGTCAATGGCTTCTGGATGCTGGTGCACTTCAAATCATTTATAATTGTGTCCGAGATGGGAGAGACAGAGATATTCAAAAGAGTAAGTTAGTAGAGAATGCCATTGGTGCCTTGTGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAGAGTGTAGCTGAAACTGGGATTATAACTGTGTTAGTGCAGTTGCTTGAAAGTGGAACCACATTAACAAAACAACGTGTGTCACTGTGTCTTACTCAATTTTCTAAGAGTTCACTTCAACTGAGCAGGCCAATACTCAAGCGCAAAGGACTATGTTGTTTCTCAGCTCCAGCTGAAATTAGCTGCATAGTTCATGGAGGAATATGCAGTGTCAAATCATCATTTTGCCTTTTGGAAGCTAATGCAGTAACACCACTCACAAGGACTCTTGGGGAATCTGACCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGGTGAAAGACTACAGAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCCATACCACTAATAATAAAATTTCTTGGTTCCCCCTCTACTGGATTGCAGGAGAAGTCTCTGAATGCTTTGGAAAGGATTTTTCGGCTAGTGGAGTTCAAACAGATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAACGGGGTAATGGTAGTGTGAGATCCATTTCAGCTAGAATATTGGCACATTTGAACGTGCTTCATGATCAATCTTCATATTTCTAA 3018 0.4009 MMVLDMFTSGPTTEAISQIIDIISEFLFYASDVLVKKDSFKDFASYMERIMPILKELKKEKVSDSETFNSAIEVMNREVKHAKQLAQECSKRSKVYLLMNCRSIVKRLENHTKEISRALSLLPLATSGLSSGIIEEIEKLCDNMQKAGFEAALAEEEILEKIESGIRENNVDSSYANNLLILIAEAVGIRNERSIMKKELDEFKNEIENARVRKDLAEALQMDQIIALLERADAASSPREKELKYFAKRQSLGTQILEPLQSFYCPITQDVMVDPVETSSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNRTLKQSIEEWKDRNTMITIATLKEKIQSGDDNEVLHSLGTLQDLCEQKDQHRKWVILENYIPALIQILGSKNRDIRNYALVILSMLAKDNEEAKERIATVDNAIESIVHSLGRRQGERKFAVALLLELCKYDLARENIGKAQGCILLLVTMSSGDDNQAARDATELLENLSYSDHNVIQMAKTNYFKHLLQRLSTGPDDVKMVMATTLAEMELTDHNKESLFDGGVLPPLLYLVSHNDLQVKTEAIKALRNLSSLKKNGLEMIGRGAVRPLLDLLFHRSIQTSSLWKDVAAIIKLLAESTISQEDAQTPVLLLEVDDDVFNLFSLISVTPPDVQQNIIQTFHALCQSPSASYIRTKLKECSAVPDLVQLCENENQNLRASAVKLFSCLVESCDEAIILENVDQKCINTLLRILKSSSDEEEILSAMGIICHLPEIHEISQWLLDAGALQIIYNCVRDGRDRDIQKSKLVENAIGALCRFTVPTNLEWQKSVAETGIITVLVQLLESGTTLTKQRVSLCLTQFSKSSLQLSRPILKRKGLCCFSAPAEISCIVHGGICSVKSSFCLLEANAVTPLTRTLGESDPGVCEASLDALLTLIEGERLQSGSKVLAEANAIPLIIKFLGSPSTGLQEKSLNALERIFRLVEFKQMYGASAQMPLVDLTQRGNGSVRSISARILAHLNVLHDQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00023 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 336 IPR013083 -
Gabi3055g00023 1005 Gene3D - 337 632 IPR011989 -
Gabi3055g00023 1005 CDD RING-Ubox_PUB 263 312 IPR045210 -
Gabi3055g00023 1005 Gene3D - 11 127 IPR036537 GO:0007166
Gabi3055g00023 1005 SUPERFAMILY RING/U-box 249 331 - -
Gabi3055g00023 1005 Coils Coil 72 92 - -
Gabi3055g00023 1005 Pfam Armadillo/beta-catenin-like repeat 530 569 IPR000225 GO:0005515
Gabi3055g00023 1005 Gene3D - 633 856 IPR011989 -
Gabi3055g00023 1005 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Gabi3055g00023 1005 SMART arm_5 799 839 IPR000225 GO:0005515
Gabi3055g00023 1005 SMART arm_5 750 796 IPR000225 GO:0005515
Gabi3055g00023 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Gabi3055g00023 1005 SMART arm_5 873 913 IPR000225 GO:0005515
Gabi3055g00023 1005 SMART arm_5 363 403 IPR000225 GO:0005515
Gabi3055g00023 1005 SMART arm_5 529 569 IPR000225 GO:0005515
Gabi3055g00023 1005 SMART arm_5 707 746 IPR000225 GO:0005515
Gabi3055g00023 1005 SMART arm_5 446 487 IPR000225 GO:0005515
Gabi3055g00023 1005 SUPERFAMILY ARM repeat 333 995 IPR016024 -
Gabi3055g00023 1005 Gene3D - 864 1003 IPR011989 -
Gabi3055g00023 1005 Coils Coil 398 418 - -
Gabi3055g00023 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 409 IPR000225 GO:0005515
Gabi3055g00023 1005 Coils Coil 186 220 - -
Gabi3055g00023 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1005 - -
Gabi3055g00023 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Gabi3055g00023 1005 CDD MLKL_NTD 17 127 - -
Gabi3055g00023 1005 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Gabi3055g00023 1005 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00023 Gabi-Chr3055 242620 254000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00023 261 1005 U-box Gene Family AT1G76390 29.389 2.73e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00023 - - gmx:100799969 1544.25