Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00020 ATGAAAGTTCCAATGGAGGAAAAACCATTCCCTGCATGGTCATGGTCCGTTGAGCAGTGCTTGAAAGAGTATGGTGTGAAATTGGACAAGGGTCTGAGTTCTTATGAGGTTGAGAAGAGGCGTGAGAAATATGGTTGGAATGAGTTAGCAAAAGAGAAGGGAAAGCCCTTGTGGGAACTAGTATTAGAACAATTTGATGACATGCTGGTGAAGATACTTTTGGCTGCAGCATTCATATCATTTCTTTTGGCTTACTTTCATGGAAGTGAATCTGGGGACTCAGGATTTGAAGCTTATGTGGAGCCACTTGTGATCATTTTGATTTTAGTCCTTAATGCTATTGTTGGAGTTTGGCAAGAGAATAATGCTGAAAAGGCTCTTGAAGCTCTTAAGGAGTTGCAATGTGAATCTGGAAAAGTGTTAAGGGATGGTTCTCTTGTGCCTAATTTGCCTGCACGAGAGCTTGTTCCCGGTGATATTGTGGAGTTGCGTGTTGGAGATAAAGTCCCTGCTGACATGAGAGTTGCAGCTTTGAAAACCTCAACTTTGCGAGTTGAGCAAAGCTCATTAACTGGAGAAGCAAATCCTGTTCTCAAAGGCACCAATCCTATTTTCTTGGATGACTGTGAGTTGCAGGCAAAAGAAAACATGGTTTTTGCAGGCACCACTGTTGTCAATGGAAACTGTCTTTGTATTGTTATCACCACAGGAATGAACACTGAAATTGGAAAGATACAGAAGCAAATACATGAGGCTTCTTTGGAGGACAGTGATACTCCCTTGAAGAAGAAGCTGGACGAATTTGGTGGCAGGCTTACCACTGCAATTGGGCTAGTTTGCCTTATTGTTTGGGTCATAAACTACAAAAATTTCATTTCTTGGGATGTTGTGGATGGATGGCCCTCAAACATCCAATTTTCTTTTCAAAAGTGCACCTACTATTTCAAAATTGCTGTTGCACTTGCTGTAGCTGCAATCCCAGAAGGTCTTCCTGCTGTTATCACAACTTGTTTAGCACTCGGTACAAGGAAAATGGCTCAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTAGAAACTTTGGGATGTACAACTGTGATATGTTCAGATAAAACTGGTACTTTGACAACAAATCAAATGTCTGTGACAGAGTTCTTTACTTTGGGTGGGAAAACCACTGCTTCCAGAGTCATTAGTGTTGAAGGAACAACTTATGATCCCAAGGATGGTGTCATTATTGATTGGACTTGCTATAACATGGATGCCAACTTGCTAGTCATGGCAGAAATATGTGCTGTTTGTAATGATGCTGGGATTTATTTTGATGGTCGCCTTTTTCGAGCTACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTTGAAAAGATGGGAGCTCCTGATATGAAGTCAAAGAACAAAATTCGGGATACACAACTTGCTTCAAACAACAACACTGTGATGTTAGGCTGTTGTGAGTGGTGGAATAGAAGATCCAAAAGGGTAGCTACATTGGAGTTTGATCGCATTCGGAAGTCAATGAGTGTTATTGTTCGTGAACCAAGTGGACAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGCTTACTGGAGCGTAGTTCACATGTGCAACTTGCTGATGGATCCCTGGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCAAAGACTCTTGGAGATGAGTTCAAAGGGATTGCGTTGCTTAGGTTTGGCTTATAAGGATGACTTGGGAGAATTTTCAGACTATTATGCTGATACTCATCCTGCCCACAAGAAATTGCTTGATCCAACATGCTACTCATCCATTGAAAGTGATCTAGTGTTTGTTGGTGTTGTTGGCTTAAGAGACCCTCCCCGTGAGGAAGTTCATAAAGCAATTGAGGATTGTAAGGAAGCTGGTATTAGAGTTATGGTAATAACTGGAGATAATAAGTCAACAGCAGAGGCTATTTGTAGGGAAATCAAATTGTTCTCTAGAGATGAGGATCTTACAGGCCAAAGTATGACAGGTAAGCAATTCCTATCTCTTTCTCCTTCAGAACAAGTTAAAACATTGTTGAGACCTGGAGGCAAAGTTTTCTCTCGAGCTGAGCCTAGACACAAGCAAGAAATTGTGAGGCTACTAAAGGAAATAGGGGAGATTGTTGCAATGACTGGTGATGGTGTAAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGTATAACTGGAACAGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATTGTTTCTGCTATTGCTGAGGGTCGCTCTATTTATGATAACATGAAATCATTTATCAGGTACATGATATCATCAAATGTTGGAGAAGTGATATCCATATTCTTGACTTCTGCTCTTGGGATCCCAGAATGCCTGATACCAGTGCAACTTCTGTGGGTGAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTTAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAGAAGTGATGATGCTCTTATAAGTTCTTGGGTTCTTTTCCGTTATATAGTAATTGGTTCCTATGTGGGAATTGCAACAGTTGGCATTTTTGTCTTGTGGTACACCCAAGCATCTTTTCTGGGCATCAATCTTGTCAGTGATGGACACACAATTATAGAACTGTCACAGCTTCGCAACTGGGGAGAGTGTCACTTGTGGTCTAATTTCACTGTTGCTCCTTTTGCTGTTGGTGGAGGTCGCTTGATCACATTTTCAAATCCTTGTGACTATTTTTCAGTTGGTAAAGTAAAGGCCATGACACTGTCTCTCTCAGTCTTGGTGGCAATTGAGATGTTCAATTCTTTGAATGCCCTCTCAGAAGAGAATAGCTTGAGGAAAATACCACCTTGGAGGAACCCATGGCTTTTGGTAGCCATGTCAATATCACTAGGACTCCATTGCCTCATACTCTACATCCCATTCCTCGCAGATGTGTTTGGTGTTGTTCCACTTAGTTTGAATGAGTGGTTTATGGTCATTCTAATATCAGCACCTGTTATTCTCATTGATGAGATTCTAAAATTAGTGGTAAGGAGTCAAAGGAGGATGTTAAAGGAGAAAGAAGCATGA 3153 0.4142 MKVPMEEKPFPAWSWSVEQCLKEYGVKLDKGLSSYEVEKRREKYGWNELAKEKGKPLWELVLEQFDDMLVKILLAAAFISFLLAYFHGSESGDSGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESGKVLRDGSLVPNLPARELVPGDIVELRVGDKVPADMRVAALKTSTLRVEQSSLTGEANPVLKGTNPIFLDDCELQAKENMVFAGTTVVNGNCLCIVITTGMNTEIGKIQKQIHEASLEDSDTPLKKKLDEFGGRLTTAIGLVCLIVWVINYKNFISWDVVDGWPSNIQFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTASRVISVEGTTYDPKDGVIIDWTCYNMDANLLVMAEICAVCNDAGIYFDGRLFRATGLPTEAALKVLVEKMGAPDMKSKNKIRDTQLASNNNTVMLGCCEWWNRRSKRVATLEFDRIRKSMSVIVREPSGQNRLLVKGAVESLLERSSHVQLADGSLVPIDDQCRELLLQRLLEMSSKGLRCLGLAYKDDLGEFSDYYADTHPAHKKLLDPTCYSSIESDLVFVGVVGLRDPPREEVHKAIEDCKEAGIRVMVITGDNKSTAEAICREIKLFSRDEDLTGQSMTGKQFLSLSPSEQVKTLLRPGGKVFSRAEPRHKQEIVRLLKEIGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAIAEGRSIYDNMKSFIRYMISSNVGEVISIFLTSALGIPECLIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRRSDDALISSWVLFRYIVIGSYVGIATVGIFVLWYTQASFLGINLVSDGHTIIELSQLRNWGECHLWSNFTVAPFAVGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRKIPPWRNPWLLVAMSISLGLHCLILYIPFLADVFGVVPLSLNEWFMVILISAPVILIDEILKLVVRSQRRMLKEKEA 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00020 1050 SUPERFAMILY HAD-like 366 830 IPR036412 -
Gabi3055g00020 1050 PANTHER CALCIUM-TRANSPORTING ATPASE 19 1046 - -
Gabi3055g00020 1050 FunFam Calcium-transporting ATPase, putative 219 364 - -
Gabi3055g00020 1050 PRINTS P-type cation-transporting ATPase superfamily signature 726 745 - -
Gabi3055g00020 1050 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Gabi3055g00020 1050 PRINTS P-type cation-transporting ATPase superfamily signature 750 762 - -
Gabi3055g00020 1050 PRINTS P-type cation-transporting ATPase superfamily signature 640 650 - -
Gabi3055g00020 1050 PRINTS P-type cation-transporting ATPase superfamily signature 368 382 - -
Gabi3055g00020 1050 PRINTS P-type cation-transporting ATPase superfamily signature 618 629 - -
Gabi3055g00020 1050 SMART Cation_ATPase_N_a_2 11 85 IPR004014 -
Gabi3055g00020 1050 SUPERFAMILY Calcium ATPase, transduction domain A 140 248 IPR008250 -
Gabi3055g00020 1050 Pfam Cation transporter/ATPase, N-terminus 13 80 IPR004014 -
Gabi3055g00020 1050 SFLD Haloacid Dehalogenase 349 778 - -
Gabi3055g00020 1050 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 1041 IPR023298 -
Gabi3055g00020 1050 CDD P-type_ATPase_SERCA 13 1039 - -
Gabi3055g00020 1050 FunFam Calcium-transporting ATPase, putative 115 250 - -
Gabi3055g00020 1050 Gene3D - 30 252 - -
Gabi3055g00020 1050 Pfam E1-E2 ATPase 134 348 - -
Gabi3055g00020 1050 NCBIfam HAD-IC family P-type ATPase 305 393 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3055g00020 1050 NCBIfam HAD-IC family P-type ATPase 699 808 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3055g00020 1050 ProSitePatterns E1-E2 ATPases phosphorylation site. 370 376 IPR018303 -
Gabi3055g00020 1050 Gene3D - 365 771 IPR023214 -
Gabi3055g00020 1050 Gene3D - 378 625 IPR023299 GO:0000166
Gabi3055g00020 1050 SFLD p-type atpase 349 778 IPR044492 -
Gabi3055g00020 1050 FunFam Calcium-transporting P-type ATPase, putative 620 771 - -
Gabi3055g00020 1050 Pfam haloacid dehalogenase-like hydrolase 365 740 - -
Gabi3055g00020 1050 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 375 622 IPR023299 GO:0000166
Gabi3055g00020 1050 PRINTS Sodium/potassium-transporting ATPase signature 361 382 - -
Gabi3055g00020 1050 PRINTS Sodium/potassium-transporting ATPase signature 979 1003 - -
Gabi3055g00020 1050 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 378 625 - -
Gabi3055g00020 1050 Gene3D - 63 1039 - -
Gabi3055g00020 1050 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 790 1044 - -
Gabi3055g00020 1050 Pfam Cation transporting ATPase, C-terminus 811 1037 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00020 Gabi-Chr3055 231397 236321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00020 6 1048 Primary Pumps ATPases(2) AT4G00900 77.863 0.0 1696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00020 K01537 - gmx:100792952 1918.28