Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00018 ATGAGGCCTGTATTTGCTGGAAACTTGGAGTATGATACCCGTCAATCAGAGCTTGAACGTTTGTTCTCCAAGTATGGCAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATCCGTGCACTTGACAATTTTCCATTTGGTTACGACAAGCGAAGGTTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGACGCCATCGCGATGGCTCAAAGGCAAACCAGAAGCCCACGAAAACCTTATTTGTTATTAACTTTGACCCAATTCGTACTAGAGTTCGTGATATGGAAAAACATTTTGAACCTTATGGGAAGGTTTTGCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTTTGAAACTCAAGAAGATGCTACTAAAGCTCTTGAGTGTACAAATATGAGTAAAATACTGGACAGGGTAGTGTCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGGGGTGATAATTCTGACAGTCCTAGAAGAGGGGGTTATGGGAGATCTCCCAGCCCAGTTTATCGCAGGCGATCAAGTCCTGACTATGGTCGTCCACACAGCCCTGTGTATGATAGGTATAATGGACCAGATAGGCGGAGGAGTCCTGATTATGGCAGGCACAGGAGTCCTGATTATGGCAGGCCTAGGAGCCCTGATTATAGCAGGCCTAGGAGCCCTGATTATGGTAGATATCGCAGCCGTTCCCCGGTACGAAGGTCAAGAACTTAA 768 0.4661 MRPVFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVRDMEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNSDSPRRGGYGRSPSPVYRRRSSPDYGRPHSPVYDRYNGPDRRRSPDYGRHRSPDYGRPRSPDYSRPRSPDYGRYRSRSPVRRSRT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00018 255 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Gabi3055g00018 255 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Gabi3055g00018 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gabi3055g00018 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Gabi3055g00018 255 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 248 - -
Gabi3055g00018 255 SMART rrm1_1 92 158 IPR000504 GO:0003723
Gabi3055g00018 255 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gabi3055g00018 255 CDD RRM2_AtRSp31_like 92 161 - -
Gabi3055g00018 255 MobiDBLite consensus disorder prediction 204 247 - -
Gabi3055g00018 255 MobiDBLite consensus disorder prediction 162 255 - -
Gabi3055g00018 255 SUPERFAMILY RNA-binding domain, RBD 86 190 IPR035979 GO:0003676
Gabi3055g00018 255 Gene3D - 83 174 IPR012677 -
Gabi3055g00018 255 Gene3D - 1 82 IPR012677 -
Gabi3055g00018 255 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Gabi3055g00018 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Gabi3055g00018 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00018 Gabi-Chr3055 223445 226238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00018 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 3.83e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00018 K12893 - gmx:100797709 438.728