Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00017 ATGACAATCTCAGACCTGAATTTTGGAATTAAACCTTTAATTGCAATCATGATTTTGTTCCTCATTCAACGTCTCTACAGCTTCTTGTGCATCAGCCCTCACTTATATCCAGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATCCGTGCACTTGACAATTTTCCATTTGGTTACGACAAGCGAAGGTTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGACGCCATCGCGATGGCTCAAAGGCAAACCAGAAGCCCACGAAAACCTTATTTGTTATTAACTTTGACCCAATTCGTACTAGAGTTCGTGATATGGAAAAACATTTTGAACCTTATGGGAAGGTTTTGCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTTTGAAACTCAAGAAGATGCTACTAAAGCTCTTGAGTGTACAAATATGAGTAAAATACTGGACAGGGTAGTGTCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGGGGTGATAATTCTGACAGTCCTAGAAGAGGGGGTTATGGGAGATCTCCCAGCCCAGTTTATCGCAGGCGATCAAGTCCTGACTATGGTCGTCCACACAGCCCTGTGTATGATAGGTATAATGGACCAGATAGGCGGAGGAGTCCTGATTATGGCAGGCACAGGAGTCCTGATTATGGCAGGCCTAGGAGCCCTGATTATAGCAGGCCTAGGAGCCCTGATTATGGTAGATATCGCAGCCGTTCCCCGGTACGAAGGTCAAGAACTTAA 774 0.4535 MTISDLNFGIKPLIAIMILFLIQRLYSFLCISPHLYPGFAFVYYEDERDAEEAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVRDMEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNSDSPRRGGYGRSPSPVYRRRSSPDYGRPHSPVYDRYNGPDRRRSPDYGRHRSPDYGRPRSPDYSRPRSPDYGRYRSRSPVRRSRT 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00017 257 SUPERFAMILY RNA-binding domain, RBD 88 192 IPR035979 GO:0003676
Gabi3055g00017 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 62 IPR000504 GO:0003723
Gabi3055g00017 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 157 IPR000504 GO:0003723
Gabi3055g00017 257 FunFam Serine/arginine-rich splicing factor RS31 85 175 - -
Gabi3055g00017 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 76 IPR000504 GO:0003723
Gabi3055g00017 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 164 IPR000504 GO:0003723
Gabi3055g00017 257 Gene3D - 33 86 IPR012677 -
Gabi3055g00017 257 Gene3D - 87 176 IPR012677 -
Gabi3055g00017 257 SUPERFAMILY RNA-binding domain, RBD 37 82 IPR035979 GO:0003676
Gabi3055g00017 257 SMART rrm1_1 94 160 IPR000504 GO:0003723
Gabi3055g00017 257 SMART rrm1_1 3 72 IPR000504 GO:0003723
Gabi3055g00017 257 CDD RRM2_AtRSp31_like 94 163 - -
Gabi3055g00017 257 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 110 - -
Gabi3055g00017 257 MobiDBLite consensus disorder prediction 206 249 - -
Gabi3055g00017 257 MobiDBLite consensus disorder prediction 164 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00017 Gabi-Chr3055 223444 225087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00017 38 166 Eukaryotic Initiation Factors Gene Family AT1G49760 25.874 1.31e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00017 K12893 - gmx:100797709 370.163