Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00011 ATGGGAAGAGCTCCTTGTTGTTCCAAAGTTGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACTAAATATATTCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCAAAAAGGGCTGGGCTTCTTAGATGTGGGAAAAGTTGTAGACTTAGATGGATGAACTATCTAAGACCAGATATAAAGAGAGGGAACATAACTACTGAAGAAGATGATCTTATAATCAGAATGCATTCACTTCTTGGAAATAGGTGGTCTCTCATAGCTGGAAGATTACCAGGCAGAACAGATAATGAAATAAAGAACTATTGGAACACCCATCTCTGCAAAAAGCTGAAAAATCAGGGATCAATAGATAAGTCATCTTCAGATGCTGAACAAGAACCTGCCAGTGCCAACAAAAAGAAGAAGAAGAACAAGAAGAAGGACAAGAAGAAAGGCACAAATGCAGAGCCACCTAAGACACAAGTTTATCTACCAAAACCTATAAGGGTTAAAGCTTTGTCACTACCAAGAACAGATAGTACCAATTCAGCTAGTGGATCAACAAGCCAAGAGAAACAAGAAAGTCCAGGAACAACAAAAGAAGTAACAAACATGCTATGTGAAGTTGGTAATGTTGGAGAAAACGATGGTTTTGGATTTTTTGGTGAAGACCATGACCTAGTCAATAGATTAGATGTTGAATATTGCCAATCTTATTTTGCCACGGATCATGGTACACTTGATAATCTATATGAAGAGTACTTGCAGCTCTTGAACATGGACCATAGCCAATATGATTTGGAATCTTTTGCAGAATCTTTGTTGGAGTAA 828 0.3841 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITTEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKLKNQGSIDKSSSDAEQEPASANKKKKKNKKKDKKKGTNAEPPKTQVYLPKPIRVKALSLPRTDSTNSASGSTSQEKQESPGTTKEVTNMLCEVGNVGENDGFGFFGEDHDLVNRLDVEYCQSYFATDHGTLDNLYEEYLQLLNMDHSQYDLESFAESLLE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00011 275 FunFam MYB transcription factor 68 126 - -
Gabi3055g00011 275 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 195 - -
Gabi3055g00011 275 CDD SANT 16 61 IPR001005 -
Gabi3055g00011 275 Gene3D - 14 66 - -
Gabi3055g00011 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3055g00011 275 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3055g00011 275 MobiDBLite consensus disorder prediction 119 198 - -
Gabi3055g00011 275 MobiDBLite consensus disorder prediction 174 198 - -
Gabi3055g00011 275 FunFam Myb transcription factor 11 67 - -
Gabi3055g00011 275 Gene3D - 71 155 - -
Gabi3055g00011 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3055g00011 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3055g00011 275 SMART sant 66 114 IPR001005 -
Gabi3055g00011 275 SMART sant 13 63 IPR001005 -
Gabi3055g00011 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3055g00011 275 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3055g00011 275 CDD SANT 71 112 IPR001005 -
Gabi3055g00011 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00011 Gabi-Chr3055 149769 150797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00011 1 140 MYB Transcription Factor Family AT4G38620 68.571 2.36e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3055g00011 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00011 K09422 - gmx:100803345 403.29