Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00004 ATGAACATTCAGTTGATGGCGGAAAAAGAAACTGATGAGGTTTATGCTTGTATCGCGTTGCTTCCGCAATCACATCAAACTGAGGCTCCACATCCTGATCCAATTCCTTCCGAGGCTCCAAAAGAAAAGTTTCACTCATTTTGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCAGTTCTGCGGAAGCATGCTACTGAGTGTCTGCCTCCTTTGGTAATTAGCTCTGACATGACCCAAGAAACCCCAACTCAGGAGTTGGTAGCTAAGGATCTTCATGGAGTTGAGTGGAAGTTTAAACATATATACAGAGGTCAGCCAAGGAGGCACTTGCTTACAACAGGCTGGAGTACATTTGTTGCATCCAAAAGATTGGTTGCTGGAGATGCCTTTGTTTTCTTAAGGGATGAGCACGGGCAACTGAGAGTTGGTGTTCGGCGTTTGGCTCGGCAACAGAGTTCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGACTGCTTGCCACTGCTTCCCATGCTGTTATGACTTGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTGATGTGAATAAATATATGGAGGCAGTCAACAATAACTATTCTGTTGGCATGCGTTTCAAGATGAGATTTGAGGGAGAGGACTCACCTGTGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGACATGTCTCCGGGATGGTCCAATTCTCAGTGGCGGACATTGAAGATTCAATGGGATGAACCGGCAAACATTCCAAGGCCAGAGAGAGTTTCTCCTTGGGAGATAGAGCCTTCTGTACCTTCTACTGTTTTGAATGTCATTCAACCAGTGGTGAAGGGCAAAAGGTCCAGGCCTGCTGATGTTTCATCTTCTGGTTTCTGTTATCACGGGTCTTCCCATGCTCATGAGCTTACACAGTTAGGCGCTGCTGCTGAAGTAGTCCAAAGCAATGAAAATCAGGTTGTATGCTCTATGAGACAGAGAGACATTAATAGCAATCCTATTAATACTAACTCTATCAGTTCTAGTGTTCGGTTGGAAGGAAAATGGCCTTCTTCACCACATTTGAATGTCACTTCTAACCTTTTCCATGAACCCTCCAAAAACAAGAAATCAGGTACATCACAATCATCTATCTCTGGTTATCCTAATGTTTCATCTAGAGCAAGTGATGGCTTGACATGTGATCTAGTGGAAGATGGGAAAAAGACTGAGAATCCCATGAATTGCTGGTTATTTGGAGTTAATTTGTCCCAAAACTCTAGCAATGTTATTACTCCTTCAGACAAAGAACTTGGATGTCCGAGTGCAACTATTGTTCCTAGTGGTCCCAAAGAATCTATTCCTGCTGCTGCATGTGAAACTGAGAGGGTTCAGACCCCCAACCATTCACTGTCCAACAAGGGGCAGAAGCAAATTATTTCTGATGTATCACCAATGGATTGGCAGAACATGCAGGCCTGTGTACCATCCATGAGGACTCGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCATTGGACTTGACCACATTGAATGGCTATGATGATCTCATAGATGAGCTTGAAAAATTGTTTGATATTAAAGGACAGCTGCGTCCGCAAAGCCAATGGGCAGTTACTTTCACTGATGATGAAAATGACATGATGCTGGTTGGTGATGATCCATGGCCGGAGTTCTGCACCATTGTGAAGAGGATTTTCATTTGTTTAAGGGAGGACTTAAAGAAAATGAAATGCAAGTTACCTGCTTCTTCATCAGAGGTTGTAGAGACTTTGATGAGCCCAGATTCACTTAATATGGATGAGACTCAACAATCTCACATGCCTTAG 1881 0.4354 MNIQLMAEKETDEVYACIALLPQSHQTEAPHPDPIPSEAPKEKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLVISSDMTQETPTQELVAKDLHGVEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRDEHGQLRVGVRRLARQQSSMPSSVISSQSMHLGLLATASHAVMTCTMFVVYYKPRTSQFIVDVNKYMEAVNNNYSVGMRFKMRFEGEDSPVRRFSGTIVGVGDMSPGWSNSQWRTLKIQWDEPANIPRPERVSPWEIEPSVPSTVLNVIQPVVKGKRSRPADVSSSGFCYHGSSHAHELTQLGAAAEVVQSNENQVVCSMRQRDINSNPINTNSISSSVRLEGKWPSSPHLNVTSNLFHEPSKNKKSGTSQSSISGYPNVSSRASDGLTCDLVEDGKKTENPMNCWLFGVNLSQNSSNVITPSDKELGCPSATIVPSGPKESIPAAACETERVQTPNHSLSNKGQKQIISDVSPMDWQNMQACVPSMRTRTKVQMQGVAVGRALDLTTLNGYDDLIDELEKLFDIKGQLRPQSQWAVTFTDDENDMMLVGDDPWPEFCTIVKRIFICLREDLKKMKCKLPASSSEVVETLMSPDSLNMDETQQSHMP 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00004 626 CDD B3_DNA 45 151 IPR003340 GO:0003677
Gabi3055g00004 626 Gene3D - 212 284 - -
Gabi3055g00004 626 Gene3D - 44 152 IPR015300 -
Gabi3055g00004 626 Pfam B3 DNA binding domain 47 151 IPR003340 GO:0003677
Gabi3055g00004 626 MobiDBLite consensus disorder prediction 371 404 - -
Gabi3055g00004 626 FunFam Auxin response factor 45 153 - -
Gabi3055g00004 626 SUPERFAMILY DNA-binding pseudobarrel domain 38 180 IPR015300 -
Gabi3055g00004 626 SUPERFAMILY CAD & PB1 domains 502 583 - -
Gabi3055g00004 626 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 595 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3055g00004 626 SMART B3_2 47 153 IPR003340 GO:0003677
Gabi3055g00004 626 ProSiteProfiles PB1 domain profile. 507 588 IPR000270 GO:0005515
Gabi3055g00004 626 Pfam AUX/IAA family 551 586 IPR033389 -
Gabi3055g00004 626 Gene3D - 503 595 - -
Gabi3055g00004 626 Pfam Auxin response factor 177 256 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3055g00004 626 ProSiteProfiles B3 DNA-binding domain profile. 47 153 IPR003340 GO:0003677
Gabi3055g00004 626 FunFam Auxin response factor 212 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00004 Gabi-Chr3055 58677 62238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00004 1 594 B3 DNA Binding Superfamily AT4G23980 53.333 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3055g00004 B3 1.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00004 K14486 - gmx:100790981 974.156