Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00003 ATGGCACATCTTGGGAATTCTCATTCTCAACCGGAAGAAGGTATAAGACATGACGATCTGTATAAAGAGTTATGGAAGTTGTGTGCAGGACCTTTGGTTGATGTTCCTGTTACTGGAGACACAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACCGATCAGGAATTGAACCAGGAAATTCCCCATTTCAATCTCCCGTCCAAGATTTTGTGCCGTGTTATGAACATTCAGTTGATGGCGGAAAAAGAAACTGATGAGGTTTATGCTTGTATCGCGTTGCTTCCGCAATCACATCAAACTGAGGCTCCACATCCTGATCCAATTCCTTCCGAGGCTCCAAAAGAAAAGTTTCACTCATTTTGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCAGTTCTGCGGAAGCATGCTACTGAGTGTCTGCCTCCTTTGGACATGACCCAAGAAACCCCAACTCAGGAGTTGGTAGCTAAGGATCTTCATGGAGTTGAGTGGAAGTTTAAACATATATACAGAGGTCAGCCAAGGAGGCACTTGCTTACAACAGGCTGGAGTACATTTGTTGCATCCAAAAGATTGGTTGCTGGAGATGCCTTTGTTTTCTTAAGGGATGAGCACGGGCAACTGAGAGTTGGTGTTCGGCGTTTGGCTCGGCAACAGAGTTCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGACTGCTTGCCACTGCTTCCCATGCTGTTATGACTTGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTGATGTGAATAAATATATGGAGGCAGTCAACAATAACTATTCTGTTGGCATGCGTTTCAAGATGAGATTTGAGGGAGAGGACTCACCTGTGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGACATGTCTCCGGGATGGTCCAATTCTCAGTGGCGGACATTGAAGATTCAATGGGATGAACCGGCAAACATTCCAAGGCCAGAGAGAGTTTCTCCTTGGGAGATAGAGCCTTCTGTACCTTCTACTGTTTTGAATGTCATTCAACCAGTGGTGAAGGGCAAAAGGTCCAGGCCTGCTGATGTTTCATCTTCTGATATTATTTCTAATTCAACTGCTTCAGGTTTCTGTTATCACGGGTCTTCCCATGCTCATGAGCTTACACAGTTAGGCGCTGCTGCTGAAGTAGTCCAAAGCAATGAAAATCAGGTTGTATGCTCTATGAGACAGAGAGACATTAATAGCAATCCTATTAATACTAACTCTATCAGTTCTAGTGTTCGGTTGGAAGGAAAATGGCCTTCTTCACCACATTTGAATGTCACTTCTAACCTTTTCCATGAACCCTCCAAAAACAAGAAATCAGTGGAAGATGGGAAAAAGACTGAGAATCCCATGAATTGCTGGTTATTTGGAGTTAATTTGTCCCAAAACTCTAGCAATGTTATTACTCCTTCAGACAAAGAACTTGGATGTCCGAGTGCAACTATTGTTCCTAGTGGTCCCAAAGAATCTATTCCTGCTGCTGCATGTGAAACTGAGAGGGTTCAGACCCCCAACCATTCACTGTCCAACAAGGGGCAGAAGCAAATTATTTCTGATGTATCACCAATGGATTGGCAGAACATGCAGGCCTGTGTACCATCCATGAGGACTCGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCATTGGACTTGACCACATTGAATGGCTATGATGATCTCATAGATGAGCTTGAAAAATTGTTTGATATTAAAGGACAGCTGCGTCCGCAAAGCCAATGGGCAGTTACTTTCACTGATGATGAAAATGACATGATGCTGGTTGGTGATGATCCATGGCCGGAGTTCTGCACCATTGTGAAGAGGATTTTCATTTGTTTAAGGGAGGACTTAAAGAAAATGAAATGCAAGTTACCTGCTTCTTCATCAGAGGTTGTAGAGACTTTGATGAGCCCAGATTCACTTAATATGGATGAGACTCAACAATCTCACATGCCTTAG 2055 0.4355 MAHLGNSHSQPEEGIRHDDLYKELWKLCAGPLVDVPVTGDTVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKILCRVMNIQLMAEKETDEVYACIALLPQSHQTEAPHPDPIPSEAPKEKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQETPTQELVAKDLHGVEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRDEHGQLRVGVRRLARQQSSMPSSVISSQSMHLGLLATASHAVMTCTMFVVYYKPRTSQFIVDVNKYMEAVNNNYSVGMRFKMRFEGEDSPVRRFSGTIVGVGDMSPGWSNSQWRTLKIQWDEPANIPRPERVSPWEIEPSVPSTVLNVIQPVVKGKRSRPADVSSSDIISNSTASGFCYHGSSHAHELTQLGAAAEVVQSNENQVVCSMRQRDINSNPINTNSISSSVRLEGKWPSSPHLNVTSNLFHEPSKNKKSVEDGKKTENPMNCWLFGVNLSQNSSNVITPSDKELGCPSATIVPSGPKESIPAAACETERVQTPNHSLSNKGQKQIISDVSPMDWQNMQACVPSMRTRTKVQMQGVAVGRALDLTTLNGYDDLIDELEKLFDIKGQLRPQSQWAVTFTDDENDMMLVGDDPWPEFCTIVKRIFICLREDLKKMKCKLPASSSEVVETLMSPDSLNMDETQQSHMP 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00003 684 CDD B3_DNA 123 225 IPR003340 GO:0003677
Gabi3055g00003 684 ProSiteProfiles PB1 domain profile. 565 646 IPR000270 GO:0005515
Gabi3055g00003 684 Gene3D - 561 653 - -
Gabi3055g00003 684 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Gabi3055g00003 684 FunFam Auxin response factor 286 357 - -
Gabi3055g00003 684 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Gabi3055g00003 684 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Gabi3055g00003 684 Gene3D - 122 226 IPR015300 -
Gabi3055g00003 684 Pfam AUX/IAA family 609 644 IPR033389 -
Gabi3055g00003 684 SMART B3_2 125 227 IPR003340 GO:0003677
Gabi3055g00003 684 FunFam Auxin response factor 123 227 - -
Gabi3055g00003 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 653 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3055g00003 684 MobiDBLite consensus disorder prediction 454 475 - -
Gabi3055g00003 684 SUPERFAMILY CAD & PB1 domains 560 641 - -
Gabi3055g00003 684 Gene3D - 286 358 - -
Gabi3055g00003 684 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00003 Gabi-Chr3055 57530 62238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00003 20 652 B3 DNA Binding Superfamily AT4G23980 55.712 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3055g00003 B3 9.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00003 K14486 - gmx:100795763 1075.08