Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00001 ATGGAGCAACAGCCACACTGCGCTACCGAAGATGACGTAACCGCCGCAGCCACCAGCGCCGTTTCGAAATCCGATAACCCGCGCGTGGGGACGCGCCACCCTGTCTACCGCGGCGTCCGGAAGCGGCGGTGGGGCAAATGGGTGTCTGAAATTCGGGAGCCACGCAAGAAGTCTCGCATATGGCTCGGTTCCTTCTCGGCGCCGGAGATGGCGGCGAAGGCCTACGACGTCGCCGCCTACTGCCTGAAGGGACGCAAGGCGCAGCTCAATTTCCCCGACGAGGTGCACCACCTTCCGCCGCTGCCTCCGCCGTCAGTCTGCACCGCCAGGGACATTCAGGCGGCGGCTGCCAAGGCGGCTCACATGATGATGAAGGCCGCTTCGCCTGAGAAGAGCAGCATTACTTCCGACGGCGATGGCGACAGCGGCGGCGATGATTTTTGGGGTGAGATAGAGCTGCCGGAGCTCATGAACAGCAACTTGTGGACTTCCTCCGGCGAAATCACGGCGTTTCCGGAGGCTGAGCTTCCGCCGCAACAACCTTTCACGGCGTGCCTATAG 561 0.6292 MEQQPHCATEDDVTAAATSAVSKSDNPRVGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFSAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHHLPPLPPPSVCTARDIQAAAAKAAHMMMKAASPEKSSITSDGDGDSGGDDFWGEIELPELMNSNLWTSSGEITAFPEAELPPQQPFTACL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00001 186 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Gabi3055g00001 186 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Gabi3055g00001 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 159 - -
Gabi3055g00001 186 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Gabi3055g00001 186 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Gabi3055g00001 186 MobiDBLite consensus disorder prediction 1 32 - -
Gabi3055g00001 186 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Gabi3055g00001 186 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Gabi3055g00001 186 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Gabi3055g00001 186 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Gabi3055g00001 186 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Gabi3055g00001 186 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00001 Gabi-Chr3055 15642 16240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00001 31 186 AP2-EREBP Transcription Factor Family AT1G01250 59.639 1.33e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3055g00001 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00001 K09286 - gmx:100806544 247.669