Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00049 ATGGGGAATCAGAAGCTGAAGTGGACGCAGGATGAAGAAGATGCCCTAATCGCTGGAGTGGAAAAGCATGGCCCTGGGAAATGGAAGAACATTCTCAAAGATCCCCAATTTGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATTTGGGTGTGAGTAATGGTGCTCAAGGGTCCAAAGAAAAATCCAGGGTTCCCAAACTCAAAGCTCCTTCTCCTGCTTCCAGTGCCACTCTACAAATTACTGCTGTGCCTCAGCAAACGGCACCTTCTGATCCTTCTCAAAATGACCATGATGTCAAAAATCCTCCAAGGTATAATGCAATGGTTTTTGAAGCTTTATCAACACTAAAAGATACCAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGAAAAAGCACCAGGTTCCTCAAAATTTCAGAAGAGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAGATAAAAAAGGAGGCCTCATCAGGGACAAAATCGCCTACACCGAAACAAAAGGATGTCCGGCCACAACGGCCATTGCCAGCCTCTGCTTTTATGGCATCTAATGAGACAATAAAGGAAGCTGCTGATACTGCGGCCTACAGAGTGGCTGATGCTGAAAGCAAATCATATTTGGCCGCTGAGGCAATCAAGGAGGCAGAAAGAATCTCATGGATGGCTGAAGATACTGATTCAATGTTACAGCTAGCCAAAGAGTTTTATGAACAATGTTGCCGCGGTGAAATTATCCCCTTGGCTTAA 816 0.4424 MGNQKLKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLGVSNGAQGSKEKSRVPKLKAPSPASSATLQITAVPQQTAPSDPSQNDHDVKNPPRYNAMVFEALSTLKDTNGSDLNAIVSFIEKKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKEASSGTKSPTPKQKDVRPQRPLPASAFMASNETIKEAADTAAYRVADAESKSYLAAEAIKEAERISWMAEDTDSMLQLAKEFYEQCCRGEIIPLA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00049 271 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 108 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3054g00049 271 SUPERFAMILY "Winged helix" DNA-binding domain 108 188 IPR036390 -
Gabi3054g00049 271 PANTHER SINGLE MYB HISTONE 4 1 268 IPR044597 GO:0003691
Gabi3054g00049 271 MobiDBLite consensus disorder prediction 90 107 - -
Gabi3054g00049 271 MobiDBLite consensus disorder prediction 56 84 - -
Gabi3054g00049 271 CDD SANT_TRF 7 56 - -
Gabi3054g00049 271 SUPERFAMILY Homeodomain-like 3 58 IPR009057 -
Gabi3054g00049 271 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Gabi3054g00049 271 FunFam Telomere repeat-binding factor 1 8 86 - -
Gabi3054g00049 271 MobiDBLite consensus disorder prediction 90 109 - -
Gabi3054g00049 271 Gene3D - 105 194 IPR036388 -
Gabi3054g00049 271 SMART h15plus2 106 171 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3054g00049 271 CDD H15 110 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3054g00049 271 MobiDBLite consensus disorder prediction 176 197 - -
Gabi3054g00049 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Gabi3054g00049 271 Gene3D - 8 87 - -
Gabi3054g00049 271 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Gabi3054g00049 271 FunFam Telomere repeat-binding factor 1 2 58 - -
Gabi3054g00049 271 SMART sant 4 59 IPR001005 -
Gabi3054g00049 271 Pfam linker histone H1 and H5 family 110 170 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00049 Gabi-Chr3054 379362 383385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00049 1 271 Single Myb Histone (SMH) Gene Family AT1G72740 47.405 1.29e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3054g00049 Linker_histone 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00049 K09422 - gmx:780537 407.912