Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00044 ATGGAAGCTCGAGTTGGGAACAAGTTCCGACTTGGTCGGAAGATTGGTAGCGGATCTTTCGGGGAGATCTATCTTGGTACAAATATTCAGACAAATGAAGAGGTTGCGGTTAAGCTTGAAAGTGTGAAAACCAAGCACCCTCAATTGTTGTATGAATCAAAGCTGTATAAAATACTGCAAGGAGGAAATGGGATCCCGAATTTGAAATGGTTTGGCGTTGAAGGAGAATACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTAATCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTCGAATATGTTCATTCCAAATCTTTTTTACATAGAGACATTAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGTCTTGCTAAGAAATACAGAGACTCCTCTACACATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACGGGAACTGCTAGGTATGCCAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTATTTCTTAAGAGGAAGTCTGCCATGGCAGGGATTGAAAGCGGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCGTCATACTTCCATTACTGTCGGTCACTGAGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGACTTTTGCGTGACCTTTTCATTCGTGAAGGTTTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACTCCTCCTGCCCATGCTATTGGTCCTGCTGCTGGGCCAAGTTCTGGTTTGCCACCAGCTGCTGCAAATGCTGATGGACAGTCAGGTGGGGAAGATGGTAGGCGTACTGGTTGGTCTTCATCAGATCCTACTCGTAGGAGAAACTCTGGACCTATTGTTAATGATGGAATCTTATCTAGACAAAAAGCCCCAATTACAAATGATTCAACTGGATCTAAAGATGTTATGTTGTCAAATTCTAATTTCTTCCGGTCAAGTGGATCTGCAAGGCGAGGCCCTGTCTCAGGCAGCCGTGATGCAGTTGTTGGCAGTGAGACTGAGCCCTCTCGTGCTACCACCCTGGATTCAAGTCAGGGAGCACTTCGTAAAATCTCTGGTGCTCAGAGAAGTTCACCTATCATGTCATCCGAGCACAACCGAGCGTCCTCTGGCAGAAACACATCAAACATAAAGAATTTGGAGTCAACTCTTAGAGGTATTGAGAGCCTGCATTTCAATGACGAGAGGGTACAGTATTAG 1422 0.4255 MEARVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAVKLESVKTKHPQLLYESKLYKILQGGNGIPNLKWFGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEYVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQIATPPAHAIGPAAGPSSGLPPAAANADGQSGGEDGRRTGWSSSDPTRRRNSGPIVNDGILSRQKAPITNDSTGSKDVMLSNSNFFRSSGSARRGPVSGSRDAVVGSETEPSRATTLDSSQGALRKISGAQRSSPIMSSEHNRASSGRNTSNIKNLESTLRGIESLHFNDERVQY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00044 473 FunFam Putative Casein kinase I 1 85 - -
Gabi3054g00044 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi3054g00044 473 CDD STKc_CK1_delta_epsilon 8 282 - -
Gabi3054g00044 473 PANTHER CASEIN KINASE-RELATED 8 404 - -
Gabi3054g00044 473 MobiDBLite consensus disorder prediction 305 453 - -
Gabi3054g00044 473 MobiDBLite consensus disorder prediction 334 349 - -
Gabi3054g00044 473 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3054g00044 473 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3054g00044 473 MobiDBLite consensus disorder prediction 407 453 - -
Gabi3054g00044 473 MobiDBLite consensus disorder prediction 361 393 - -
Gabi3054g00044 473 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Gabi3054g00044 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gabi3054g00044 473 FunFam Casein kinase I isoform delta-like 1 308 - -
Gabi3054g00044 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3054g00044 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00044 Gabi-Chr3054 341497 346177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00044 8 229 MAP Kinase Kinase Kinase AT1G54960 26.068 1.02e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi3054g00044 Pkinase 1.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00044 K02218 - gmx:100787808 830.861