Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00043 ATGGCACATGGGAGGATAAGGGCAAAGCTCCGGAGGAGCCATCTTTACACATTTGGTTGCCTTCGGCCTAGTGCCACCGATGAGGAGCCTCATCCACTTCAAGGTCCTGGGTATTCAAGAACTGTGTATTGCAACCAGCCTCAGCTTCATGAAAAAAGACCTCTATATTACTGCAGGAATGATATATCCACAACCAAATACAATGTTATTACATTTTTCCCCAAGGCACTTTTTGAACAATTCCGAAGGGTTGCTAATATATACTTCCTTTTGGCTGCGTGCCTCTCAGCCTCTCCAATTTCACCTTTCAGCCCACTGAGCATGATTGCTCCTTTGGCATTTGTTGTGGGACTTAGTATGGCAAAGGAAGCATTGGAAGATTCGCGCAGGTTCCTTCAGGATGTCAAAGTTAATCATCGGAAAGTTAATCACCATAAAGGCAATGGTGCTTTTGGTCCCAGGTCATGGCAGAACATTATGGTTGGGGATGTGGTGAAAGTAGAAAAGGATCAGTTTTTTCCAGCTGATTTGCTTCTCTTGTCGTCAAGTTATGAGGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGTGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGTCTACCTTGAGTCTAGATAATGATGAAGCTTTTAAGGATTTCACAGGAACAATACGTTGTGAAGACCCAAACCCCAATCTTTACACTTTTGTTGGAAACTTCGAGTATGAGCGCCTAGTTTATCCTCTTGATCCTAGTCAAATTCTCCTCCGAGATTCTAAGCTCAGGAACACTGATTACATCTATGGGGTGGTTATTTTTACTGGTCATGACAGCAAAGTCATGCAGAATGGCACAAGATCCCCTTCCAAAAGGAGCACAATAGAAAAGAAGATGGATTATATCATATACACTCTCTTTACTGTCCTTATTTTGATATCCGTTATAAGTTCCATAGGATTTATGGTCAAGACTAAGTACCAAAGCACAAAGTGGTGGTACTTACGGCCAGACAATATTGAATACCAGTATGATCCCCAGAAAATTGGAGTGGCTGGGATGAGTCATCTGATTACTGCACTCATTCTCTATGGATATTTGATACCCATCTCACTTTATGTTTCCATTGAGGTTGTGAAGGTGTTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGAAGAAACTGGGACTCCAGCTGAAGCACGGACCTCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGACAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTATTGCATATGGCATGCGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATATTGAGGACCAGAATTCAGATCTCTCCAATTTCCCCATGCCTAAGCCCAAAGCGCAAGTTTCATGGGAACATGTTGGAACAGCTGAAGAAATTGAACTGGAGACTGTCGTTACTTCCAAAGGCGATGAGCATCAAAGGCGTGCCATAAAGGGATTTGGTTTTGAAGACAACCGCCTCATGAATTGTAATTGGTTGAAAGAGCCCAATGCTGATGACCTTCTGTTGTTTTTCCGAATATTAGCAGTTTGCCATACTGCCATTCCTGAGCTGAATGAGGAGACTGGCACTTTTACATATGAAGCTGAGTCACCTGATGAAGGGTCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTGTAGAAGGACTCAGTCAAGTATTTTCATACGTGAAAGATTTTCTGCTTCAGGACAAGTGGTTGAAAGAGAATACAAACTCTTGAATCTGTTGGATTTCACTAGTAAAAGAAAACGAATGTCCGTGATTGTGCGTGATGAGGAGGGAAAAATTTTTCTTCTTTGCAAAGGGGCTGACAGTATCATATTTGATCGGTTGTCAAAGAATGGGAAAATGTATTTGGAGGCTACTACCAGACATTTAAATGAATATGGAGAAGCTGGTTTGCGAACGCTAGCCCTCGCTTATAGAATGCTTGATGAGCAAGAGTACTTTGCTTGGAACAATGAATTTCAGAAAGCCAGAGCAGCTGTGGGGGCTGACAGAGAGGCAATGCTTGAGCGGGTATCGGAGATAATGGAAAGAGAGTTGATTCTTGTTGGCGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTGCCCCAATGTATTGATAAACTTGCTCAAGCTGGTCTCAAGATCTGGGTGTTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGATTTTCTTGCAGTTTGCTTCGACAGGGCATGAAGCAGATCTGTATAACTGCTACAAATTCAGATTCAGTAACCAATGATGTCAAAGAGGTCATCAAGGACAACATTTTGAATCAAATCACCAATGCTATACAAATGATAAAGCTGGAGAAGGATCCTCATGCTGCGTTTGCATTAATTATTGATGGGAAAACTCTGACATATGCTTTAGAAGATGATATGAAGCACCTATTTTTGGGATTGGCAGTTGATTGTGCATCTGTCATCTGCTGTCGTGTCTCTCCCAAGCAAAAGGCATTGGTAACAAGGTTAGTAAAAGAAGGGACTGGAAAGACCACTCTAGCAATAGGTGATGGTGCAAATGATGTCGGCATGATTCAAGAAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCGGTGATGGCTAGTGACTTTGCGATTGCCCAATTTCGATTTTTGGAGCGGCTTCTGGTTGTCCATGGACACTGGTGTTACAAGAGAATTGCGCAAATGATCTGTTATTTCTTCTACAAGAATATAGCATTCGGCCTCACCATCTTCTATTTTGAGGCCTTTACAGGCTTCTCTGGTCAATCGGTTTATGATGACTGGTACATGATTTTGTTCAATGTTGTTCTGACATCATTACCTGTCATTTCACTTGGCGTTTTTGAGCAAGATGTTCCATCGGAAGTTTGTTTACAGTTTCCTGCACTGTATCAACAAGGACCCAAAAACTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGCCAATGGTTTCTATTCCTCCCTCATCATCTTCTTCCTTAACATCACCATCTTCTACGACCAAGCATTCCGCATCGATGGCCAGACTGCTGATATGGCTGCTGTTGGGACCACAATGTTCACTTGCATCATCTGGGCGGTTAACTGCCAGATTGCGCTGACAATGAGCCATTTTACATGGATTCAGCACCTGTTTGTATGGGGAAGCATAACCGCTTGGTACCTGTTTCTTGTGTTATATGGCATGTTTTCTCCTGTATATTCCAAGAATGCCTACCAAATACTGGTTGAAGCTCTTGGTCCTGCCCCTATTTATTGGACAGCAACCCTTTTAGTTACAGTTACATGCAATCTTCCTTATCTTGCCCACATATCCTTCCAAAGATGTTTCAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACAAGGGAGCGTTCTAAAGCCAGACAGGACACCAAGATTGGGTTCACGGCAAGAGTGGAAGCAAAGATCAGGCATTTGAAAGGAAGGTTACAGAAGAAGCACTCTTCTTTGGGTATTTTGTCCCCAACGTGA 3675 0.425 MAHGRIRAKLRRSHLYTFGCLRPSATDEEPHPLQGPGYSRTVYCNQPQLHEKRPLYYCRNDISTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNHRKVNHHKGNGAFGPRSWQNIMVGDVVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLSLDNDEAFKDFTGTIRCEDPNPNLYTFVGNFEYERLVYPLDPSQILLRDSKLRNTDYIYGVVIFTGHDSKVMQNGTRSPSKRSTIEKKMDYIIYTLFTVLILISVISSIGFMVKTKYQSTKWWYLRPDNIEYQYDPQKIGVAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGIAYGMRSSEVELAAAKQMASDIEDQNSDLSNFPMPKPKAQVSWEHVGTAEEIELETVVTSKGDEHQRRAIKGFGFEDNRLMNCNWLKEPNADDLLLFFRILAVCHTAIPELNEETGTFTYEAESPDEGSFLVAAREFGFEFCRRTQSSIFIRERFSASGQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGKIFLLCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYRMLDEQEYFAWNNEFQKARAAVGADREAMLERVSEIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFSCSLLRQGMKQICITATNSDSVTNDVKEVIKDNILNQITNAIQMIKLEKDPHAAFALIIDGKTLTYALEDDMKHLFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMANGFYSSLIIFFLNITIFYDQAFRIDGQTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSITAWYLFLVLYGMFSPVYSKNAYQILVEALGPAPIYWTATLLVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQDTKIGFTARVEAKIRHLKGRLQKKHSSLGILSPT 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00043 1224 Gene3D - 593 722 IPR023299 GO:0000166
Gabi3054g00043 1224 Gene3D - 113 288 - -
Gabi3054g00043 1224 SUPERFAMILY HAD-like 410 925 IPR036412 -
Gabi3054g00043 1224 Gene3D - 419 431 IPR023214 -
Gabi3054g00043 1224 FunFam Phospholipid-transporting ATPase 724 921 - -
Gabi3054g00043 1224 Pfam Cation transport ATPase (P-type) 546 651 - -
Gabi3054g00043 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 519 685 IPR023299 GO:0000166
Gabi3054g00043 1224 Gene3D - 432 455 IPR023299 GO:0000166
Gabi3054g00043 1224 SFLD Haloacid Dehalogenase 404 932 - -
Gabi3054g00043 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 32 1178 - -
Gabi3054g00043 1224 SUPERFAMILY Calcium ATPase, transduction domain A 147 285 IPR008250 -
Gabi3054g00043 1224 NCBIfam HAD-IC family P-type ATPase 853 962 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3054g00043 1224 Coils Coil 448 468 - -
Gabi3054g00043 1224 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Gabi3054g00043 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Gabi3054g00043 1224 Gene3D - 723 921 IPR023214 -
Gabi3054g00043 1224 NCBIfam phospholipid-translocating P-type ATPase 57 1167 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Gabi3054g00043 1224 FunFam Phospholipid-transporting ATPase 118 288 - -
Gabi3054g00043 1224 SFLD p-type atpase 404 932 IPR044492 -
Gabi3054g00043 1224 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Gabi3054g00043 1224 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Gabi3054g00043 1224 FunFam Phospholipid-transporting ATPase 591 722 - -
Gabi3054g00043 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1150 IPR023298 -
Gabi3054g00043 1224 CDD P-type_ATPase_APLT_Dnf-like 59 1040 - -
Gabi3054g00043 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 909 1159 IPR032630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00043 Gabi-Chr3054 333969 340865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00043 1 1222 Primary Pumps ATPases AT1G17500 76.206 0.0 1958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00043 K01530 - gmx:100819559 2240.31