Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00041 ATGTCTTCCTCTACCAAAATGCATGACGTATTTCTTAGCTTTAGAGGAGAGGACATCCGTACCACCTTCGTTAGCCATCTTCACAATGCTCTGAATAAGGTCAAACTAATCAGAACATTCATAGATTATAATCTTCAAAGAGGAGAAGATGTTTGGCCAAAGCTTTCCCAAGCAATCGAGGACTCGCATATATCGGTTGTTATTTTCTCAGAAAATTATGCTACCTCGAAATGGTGCTTGGAAGAACTCGACAAAATACTCCAATGGAGAAAATGTCATGGTCAAGTTGTTTTACCTGTTTTCTATCACACGGATCCATCACACGTCAGGCAACAGAAGGGTAGTTACGAGATAGCATTCGCCAAACATGAGCGAGATTTTGGGGACAAAGACAGGGAATCCAACAAACAAAGAGTACATAGGTGGAGAACTGCTCTCACTGAAGCAGCCAATATATCTGGATGGGACTCACGAAACTATATGGAAGAGCCTCAACTCATCGAGAACATTGTCAATGATGTATTGCAAAAACTGGAATTGAGGAAACCTAGAGAACTGAAAGGCATTGTAATTGAAAAAAATTGTAGCAATGTTGAATCATTAATGAAAATAATTCGAAAAATTGGAATTTGGGGCATGGGCGGGGTAGGTAAGACGACCATTGCTAAAGTCTTGTTTGCCAAACTCTTTCCCCAATATGACAATATCTGCTTTGTGGACAATGCAAGAGAATTTTCCCCTAGTAAGCTTCACTTTGAGCTATTCAAGGAAGAAATTTCCTCATCTAATGTTGTAGGATCCTCATTCAACATGAGGAGGCTCACTGGCAAAAAAGTTTTCATAGTACTTGATGACATGGATAATTTAGACCAAATTGAATATTTGTGTAAAGAGTACCGTTACTTAAGTCCCGATAGTAGACTCATTATAACAACAAGAGATCGGCAATTGCTTCATGGAAGAGTTGATTTCATATACGGGGTCGAGGAATGGGAGCGTACAGAATCTCTGAAGTTTTTTTGCTCAAAAGCCTTCAAACAAAGCAAACCCCAAAGTGGTTTTGAGGATCTCTCAAAAATGGCAGTTGATTATGCAGGGGGAGTTCCATTAGCTCTTGAAGTTTTGGGTTCATATCTTCATTTGAAAAGTGCTAAATTTTGGAAAAGTACTCTCAGAAAACTCAACGATTATCCTGATAAGAAAATTCAAAGCGTGTTAAGAGTGAGCTATGATGATGGATTAGATGCTCTACAGAAGAAGATTTTTCGAGACATAGCATTTTTTTTCCAAGGAAAAGAGAAAGATCATGTCCAATCAATTCTAGATGCCTGTGGTTTCGAAGCAAGTAGCGGATTAGAAGTCCTTGAAGACAAAGCTTTGATAACTATTTCACATAGCAATGGAATACAAATGCACAACTTGCTACAAATAATGGGTTTGGAAATAGTACGCAAAGAAGATGAAAATAATCCCGGAAGACGTAGCCGATTGAGGGATAGTGAAGCTCGTGAAGTAATTGAGAAAAACAAGGGGACTGATGCAATTGAAGGCATAACATTAGATTTGTCTCAAATTAAAGATTTGCGTTTGCCTATTGACACATTCACAAAGATGGAAGCCTTAAGATTTCTTAAATTATATATTCCTTCGGGTCAGATACGTTCTAATAATACATACATCGACCTTCCTACAGTTCTTAAGCCATTTTCTGACAAACTGAGGTATGTTGAGTGGACTGGATACCCATTTGAGTCTCTTCCATCACCTTTTCGTGCTAATTTGCTTGTGGAGATTCGCATGCCGCACAGTAATGTTAAACAACTTTGGCAGGGGACACAGGAACTTGATAATTTGGAGGGAATTGACCTAAGTGAATGCAAACAGTTTTTATTCCTTCCGGATTTGTCTAAGGCTTCAAGACTTAAATGGGTGAATCTCTCCGGTTGTGAGAGTTTGTGTGATCTTCATGATTCTGTTTTATCGGCCGATACACTTGTTACTTTGTTACTGGATAAGTGTACAAGGCTATATAGTGTTAAAGGCAAGAAGCATTTAAAGTCTCTGGAGACAATCAGTGTCAATGGCTGCTTAAGTCTGAAGGAATTTGCAGTGTCTTCGGAATTACTAGAGAACTTGGATCTAAGCAATACAGGAATCCAAAGACTGGACACATCAATTGGGCTTTCAAAGAATCTTAAATGGCTAAACCTAGAGGGTTTAAGACTCGGGCATCTTCCAACGGAGTTATCTTGCTTGAAATGTCTTAGGGAGCTGAAGCTTTCTGACAGTGGACTGGTAATTGACAAACAGAAGCTACATCATCTGTTTGATGGCTTACGATCTCTACAAATACTACATTTGAAGGGTTGTATTAATAACTTATTTGAAATCCCTGACAACATCAAGTTCTTGTCAGAATTACAGGAATTAAGGCTAGATGGAAGCAATGTGATAAGCTTGCCTGAAAGCATGAAGGATCTTCAAGAGCTTGAAATTCTGTCCTTGGATAATTGCAGGGAGCTTCCGTGCCTACCAGAGCTTCCACCCCTCATCAAACAGTTATATGCCGTTAACTGCAAGTCATTGGTGTTCGTGTCAAATTTAAAGACTTTGGCAAAAAAGATGTTAGGAAAGACCAAACACATTTCTTTCAAGAACAGCTTGAAATTGGATGGACATTCACTCAAATGTATTGTGGAAAACCTCCATTTAACAATGATGAGTGCAGCATTGGACAATGTCATAGTAAGAACATTTCGGGTGGACGTCCACAGATTCAACTATAACAGTGTTGAGGTTTGTTTACCAGGAAGCAGTGTCCCAAGGCAGGTCAATAATACAACAACAGAGTCATCCATTACCATCAATCTTCCTCACCGTTCCAACTTGCAGGGCTTCATTTACTCTGTGGTTCTTTCTCCAGCCCATGGAATGAAGAAGCATGGCGCTAAAATAAGATGTGAATGCGCCATGGCAGAAGGTACAAAGGTTACATGGTTAAAGACTGATATCACGGAATTGAAGTCGGATCATGTTTATGTATGGTATGATCCATTCCATTGTGACAGTATTCTCAATTCTAATGAACCAAAAGTTCGTTTTAACTTCCGAGTTGCAAATGATAAGGGGGAAGTTGATGGTTCCATCCGTGTTAAAGAGTGTGGGGTACACCTCATAAGTGTTTCAGAATTGCTCAGTGTTTTACCGGAACTGGACTTGGATTCAGATAAGAAAATGGACTTGCAGAAGGGATTGGAGAAAGAATCAGGAAGTAGCTTAACCTTAACATCCAAGATCTGA 3300 0.393 MSSSTKMHDVFLSFRGEDIRTTFVSHLHNALNKVKLIRTFIDYNLQRGEDVWPKLSQAIEDSHISVVIFSENYATSKWCLEELDKILQWRKCHGQVVLPVFYHTDPSHVRQQKGSYEIAFAKHERDFGDKDRESNKQRVHRWRTALTEAANISGWDSRNYMEEPQLIENIVNDVLQKLELRKPRELKGIVIEKNCSNVESLMKIIRKIGIWGMGGVGKTTIAKVLFAKLFPQYDNICFVDNAREFSPSKLHFELFKEEISSSNVVGSSFNMRRLTGKKVFIVLDDMDNLDQIEYLCKEYRYLSPDSRLIITTRDRQLLHGRVDFIYGVEEWERTESLKFFCSKAFKQSKPQSGFEDLSKMAVDYAGGVPLALEVLGSYLHLKSAKFWKSTLRKLNDYPDKKIQSVLRVSYDDGLDALQKKIFRDIAFFFQGKEKDHVQSILDACGFEASSGLEVLEDKALITISHSNGIQMHNLLQIMGLEIVRKEDENNPGRRSRLRDSEAREVIEKNKGTDAIEGITLDLSQIKDLRLPIDTFTKMEALRFLKLYIPSGQIRSNNTYIDLPTVLKPFSDKLRYVEWTGYPFESLPSPFRANLLVEIRMPHSNVKQLWQGTQELDNLEGIDLSECKQFLFLPDLSKASRLKWVNLSGCESLCDLHDSVLSADTLVTLLLDKCTRLYSVKGKKHLKSLETISVNGCLSLKEFAVSSELLENLDLSNTGIQRLDTSIGLSKNLKWLNLEGLRLGHLPTELSCLKCLRELKLSDSGLVIDKQKLHHLFDGLRSLQILHLKGCINNLFEIPDNIKFLSELQELRLDGSNVISLPESMKDLQELEILSLDNCRELPCLPELPPLIKQLYAVNCKSLVFVSNLKTLAKKMLGKTKHISFKNSLKLDGHSLKCIVENLHLTMMSAALDNVIVRTFRVDVHRFNYNSVEVCLPGSSVPRQVNNTTTESSITINLPHRSNLQGFIYSVVLSPAHGMKKHGAKIRCECAMAEGTKVTWLKTDITELKSDHVYVWYDPFHCDSILNSNEPKVRFNFRVANDKGEVDGSIRVKECGVHLISVSELLSVLPELDLDSDKKMDLQKGLEKESGSSLTLTSKI 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00041 1099 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 155 IPR035897 -
Gabi3054g00041 1099 Gene3D Ribonuclease Inhibitor 482 707 IPR032675 -
Gabi3054g00041 1099 Gene3D Ribonuclease Inhibitor 708 902 IPR032675 -
Gabi3054g00041 1099 Pfam NB-ARC domain 208 411 IPR002182 GO:0043531
Gabi3054g00041 1099 SUPERFAMILY "Winged helix" DNA-binding domain 400 487 IPR036390 -
Gabi3054g00041 1099 Pfam TIR domain 8 183 IPR000157 GO:0007165
Gabi3054g00041 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 425 IPR027417 -
Gabi3054g00041 1099 SUPERFAMILY L domain-like 520 858 - -
Gabi3054g00041 1099 PRINTS Disease resistance protein signature 365 379 - -
Gabi3054g00041 1099 PRINTS Disease resistance protein signature 273 287 - -
Gabi3054g00041 1099 PRINTS Disease resistance protein signature 207 222 - -
Gabi3054g00041 1099 PRINTS Disease resistance protein signature 613 629 - -
Gabi3054g00041 1099 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 703 IPR044974 GO:0006952
Gabi3054g00041 1099 Gene3D - 5 175 IPR035897 -
Gabi3054g00041 1099 SMART till_3 7 152 IPR000157 GO:0007165
Gabi3054g00041 1099 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 180 - -
Gabi3054g00041 1099 ProSiteProfiles TIR domain profile. 6 178 IPR000157 GO:0007165
Gabi3054g00041 1099 FunFam Disease resistance protein (TIR-NBS-LRR class) 332 414 - -
Gabi3054g00041 1099 Pfam Leucine Rich Repeat 595 613 IPR011713 -
Gabi3054g00041 1099 Gene3D - 176 322 IPR027417 -
Gabi3054g00041 1099 Gene3D - 332 414 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00041 Gabi-Chr3054 281860 288896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00041 3 842 WRKY Transcription Factor Family AT4G12020 30.241 1.15e-81 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00041 - - cam:101515491 1373.22