Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00033 ATGTCTTCTTCTTCCTTTGCCAAAAAGAACGATGTATTCATTAGCTTCAGGGGTGAGGACACCCGAACCAATTTCACTAGCCATCTTCATAATGCTCTCTGCAACAACAACATCGAAACATACATTGATTATGAGCTTAAAAAGGGAGATGAAGTTGGGCCTGCACTTGAAAAAGCAATCAAGGACTCAAGTATATCCATCATCGTTTTCTCAGAAAACTATGCTACATCAAAATGGTGCTTGGAAGAACTCCTCAAAATACTCGAGTGCAGAAAATATCATGGACAGGTAGTTATACCTGTTTTCTATGAAACGGATCCATCACATGTACGTAAACAGAAGGGGAGTTACGAGAAAGCATTCGCCAAATATGAGACAGATCTCACAAATAGCGGATCCAACCAAGACAAAGTGTCTGAGTGGAAAGCTGCTCTCGCTGAAGCCGCCAATATATCTGGATGGGACTCTCGTACCCATAGGGATGATTCTGAAGCCGTCCAAAACATTGTGAAAGATGTTTGGCAAAAGCTGTCCCTGATGTACCCGAATGAACTGAAAGGCCTTGTTCAAATTGACAAAAATGGTAAATCCATTGAATCATTACTCAAGAAAGTTCCAAGAATTGGAATTTGGGGAATGGGCGGCATAGGTAAGACAACCATAGCTAGACACATGTTTGCCGAACACTTTCCACAATTTGACAGTGTGTGCTTCCTGGCAAATGTAAGAGAAGAATCAGAGAAGTTCGGACTAACGTATACACGTGATAAACTTCTCTCTGAGTTACTAAAGGAACCAATCACCACATCTCATGTTACTGGATCCACATTCATTAAGAGGAGGCTCAGTAGTAAAAAGGTTTTCATTGTACTTGATGATGTTGATAGTTCTACTCAACTAGAAGAATTATTGTGTGAACTAGATGACCTTGGACTAGACAGTAGACTCATTATAACAACGAGAAATAGGCATATGCTTAGTGGAAGAGTTGATGTGATATATGACGTCACAGAATGGAAGTTTCCAGAATCTCTAAAGCTTTTTAGCTTAGCAGCCTTCAAGCAAAGCCATCCTAAAGAAGGTTATGAGCATCTTGCAGAAAGGGCAGTTGCCTGTGCAGGAGGCGTTCCCTTAGCTTTAAAAATTTTGGGTTCACATTTTCATTCCAGAGATACTGAATTTTGGAAATGTGATTTGGATAAATTTGAGAGCAAGAAGGAATCCTTTAAGGAAATTCAAAACGTGTTACAAGTGAGCTATAATGGATTATCAGAGCTAAACCAGGCAATATTTCTGGACATTGCATTCTTTTTCAAAGATGAAAATAAAGACCACGTCATAAGGATACTAGATGCCTGTGATTTCTTCGCTACTAGTGGAATAAGAGTCCTCGAAGATAAAGCCCTTATAACTATTTCAAAGAGCAATAGAATAGAAATGCATGACTTGCTACAAGAAATGGGTTTGGATATAGTTCGGAAAGAATTTAGCAGACACCCAGGAAGACGTAGCCGATTGAGGGATATTGGAGAAGTTCGTGATGTACTTAACAAAAACAAGGGGACTGATGCAGTTGAAGGCATGACATTAGATTTGTCTCAAAAAGTAGATTTACACATAAGTGCTGCTACATTCAACATAATGACCGGTTTAAGATTGCTTAAATTATATGTTCCCTTGGATAAGAAGAGATCAACGACTGTGAAGCATCCTCCAGCTCTTATGCCATTTTCGGATAAAATGAGGTACCTTGAGTGGTATGGATACCCTTTGAAGTCTCTTCCACCACCTTTTTGTGCTGAGCTGCTTGTTGAGATTCGTTTGCCTTACAGCGATGTTGAATATCTTTGGGGTGGCATGCAGGAACTTAAGAATTTAGAAAGAATGGACCTAAGTGAATGCAAACAGTTGATCAAGCTCCCAGATTTATCTGGCGCGTCAAAACTCAAATTGTTGTTTCTCTCCGGTTGTGAAAGTTTATGCGTTGTTCACCCATCTGTTCTTTCTAAGGACACACTTGTTACTCTGCTACTCGATAGGTGCAAAAAACTTGAAAGTGTAATATGTGAGAAGCATTTAAGATCTCTAGAGAAGTTCAGTGTCAATGGCTGCTCAAGGCTGAAGGAATTCTCATTGTCCTCGGATTTAATTGAAAGGTTGGATTTAAGCGATACAGGAATCGAAATATTGCCCTCATCTATCGGTCGTCTAAGAAAGCTTGTGTCCCTCAATCTAGAAGGTTTAAGACTTCAGAATCTTCCAAATGAGTTGTCTGACCTGACGTGTCTTACTGAGCTTTGGATTTCAAACTGCAATATAGTAACTAAACAGAAGTTACATGTTCTGTTTGACGGCCTGCGATCTTTACGAAAACTATATTTGAAAGAATGTTGTAACTTATCTGAACTCCCAAACAACATCAGTGGATTATCATCATTATACGAATTAAGACTAGATGGAAGTAGTGTGGAGACGTTGCCTGAAAGCATCAAGGACCTCTCAAAGCTAGAAATTTTGTCCTTAGAGAATTGCAGGAAGCTTCGGTGTTTGCCAGAGCTTCCTTGGAACATAAAGGAGTTTAATGCAGATGACTGCACATCATTGGTAAGAGTATCCATTTTAAAGACTTATTCAGAAGAAATGATAGAAAAGGCGAAATCCATTTCTTTCAAGAATGCTATGAAATTGGATGGACCTTCGATTGACAGCATTGTTGAAGCTGCTCTATTAACAATGAAGTTTTCTTTTGGATATGACAATTACAACAGTTCTGGGGTTTGTTTACCAGGAAGCAGAGTCCCATTGCAGTTCAAATACCGAAAACCACATTCCTCCATAACTATTGGAATTCCTAACCTTTCCAACTTGCAGGGATTCATTTTTTCGGTAGTTGTTTCTCCATCCTGTGGAATGGAGAAATATGATAATGGTGCTAAAATCCAATATCAATGCTACTCGGAAGATGGCAAAAAGGTGAGATATGCGTATACATGTCATTATAAAAATGTTAAGGATTTGAAATGTGATCATGTTTATGTATGGTATGATCCTTTCAGTTCTGACAGCATTCCCGGCAGGGATGAAACAAAGGTTTGTTTTGAATTCAGTGTTAGAACTGATACTGGGGAGTGCCATGGCTTGTTCCGTGTGAAAGAATGTGGGGTCTTTCCTTTACATTCGTCAGAATCTTGGATAGGGAAAAGTTACATGGACTTGGGAAGGGAGTGGATAATGAGGGAGTCAGGATCAGATTTGTCTGAGGAAATGGAAGTTGACTTGGAAAGGGAGTGGATGATGAGGAAGTCAGGATCAGATTTGTCTGAGGAAATGGAAGTTGACTCGGAAACAGAGTTGCAATGGGAATCGCTAAAGCAGTTAGGATTAGGTTTGTATGAGGAAATGGAATTTGAGTCAGAAACAAGTGACGGATCTGATGAGAGGAAAGGCAAAGGAGTAGAATCAGTTGAAAAAGAGACACAGAAATCCATTAATTTCGTCTTCCCACCTCGTCCAACTGGTATATGGAAGAACACAACACAGGGTTTGAAAGATATAGTCTCTCTATTCCCTTGA 3573 0.3955 MSSSSFAKKNDVFISFRGEDTRTNFTSHLHNALCNNNIETYIDYELKKGDEVGPALEKAIKDSSISIIVFSENYATSKWCLEELLKILECRKYHGQVVIPVFYETDPSHVRKQKGSYEKAFAKYETDLTNSGSNQDKVSEWKAALAEAANISGWDSRTHRDDSEAVQNIVKDVWQKLSLMYPNELKGLVQIDKNGKSIESLLKKVPRIGIWGMGGIGKTTIARHMFAEHFPQFDSVCFLANVREESEKFGLTYTRDKLLSELLKEPITTSHVTGSTFIKRRLSSKKVFIVLDDVDSSTQLEELLCELDDLGLDSRLIITTRNRHMLSGRVDVIYDVTEWKFPESLKLFSLAAFKQSHPKEGYEHLAERAVACAGGVPLALKILGSHFHSRDTEFWKCDLDKFESKKESFKEIQNVLQVSYNGLSELNQAIFLDIAFFFKDENKDHVIRILDACDFFATSGIRVLEDKALITISKSNRIEMHDLLQEMGLDIVRKEFSRHPGRRSRLRDIGEVRDVLNKNKGTDAVEGMTLDLSQKVDLHISAATFNIMTGLRLLKLYVPLDKKRSTTVKHPPALMPFSDKMRYLEWYGYPLKSLPPPFCAELLVEIRLPYSDVEYLWGGMQELKNLERMDLSECKQLIKLPDLSGASKLKLLFLSGCESLCVVHPSVLSKDTLVTLLLDRCKKLESVICEKHLRSLEKFSVNGCSRLKEFSLSSDLIERLDLSDTGIEILPSSIGRLRKLVSLNLEGLRLQNLPNELSDLTCLTELWISNCNIVTKQKLHVLFDGLRSLRKLYLKECCNLSELPNNISGLSSLYELRLDGSSVETLPESIKDLSKLEILSLENCRKLRCLPELPWNIKEFNADDCTSLVRVSILKTYSEEMIEKAKSISFKNAMKLDGPSIDSIVEAALLTMKFSFGYDNYNSSGVCLPGSRVPLQFKYRKPHSSITIGIPNLSNLQGFIFSVVVSPSCGMEKYDNGAKIQYQCYSEDGKKVRYAYTCHYKNVKDLKCDHVYVWYDPFSSDSIPGRDETKVCFEFSVRTDTGECHGLFRVKECGVFPLHSSESWIGKSYMDLGREWIMRESGSDLSEEMEVDLEREWMMRKSGSDLSEEMEVDSETELQWESLKQLGLGLYEEMEFESETSDGSDERKGKGVESVEKETQKSINFVFPPRPTGIWKNTTQGLKDIVSLFP 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00033 1190 PRINTS Disease resistance protein signature 207 222 - -
Gabi3054g00033 1190 PRINTS Disease resistance protein signature 621 637 - -
Gabi3054g00033 1190 PRINTS Disease resistance protein signature 281 295 - -
Gabi3054g00033 1190 PRINTS Disease resistance protein signature 373 387 - -
Gabi3054g00033 1190 ProSiteProfiles TIR domain profile. 8 177 IPR000157 GO:0007165
Gabi3054g00033 1190 Gene3D - 7 174 IPR035897 -
Gabi3054g00033 1190 Pfam NB-ARC domain 207 421 IPR002182 GO:0043531
Gabi3054g00033 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 434 IPR027417 -
Gabi3054g00033 1190 Gene3D - 341 424 IPR042197 -
Gabi3054g00033 1190 Gene3D Ribonuclease Inhibitor 715 881 IPR032675 -
Gabi3054g00033 1190 Gene3D Ribonuclease Inhibitor 528 714 IPR032675 -
Gabi3054g00033 1190 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 713 IPR044974 GO:0006952
Gabi3054g00033 1190 Pfam TIR domain 11 186 IPR000157 GO:0007165
Gabi3054g00033 1190 SUPERFAMILY "Winged helix" DNA-binding domain 410 495 IPR036390 -
Gabi3054g00033 1190 MobiDBLite consensus disorder prediction 1135 1163 - -
Gabi3054g00033 1190 SUPERFAMILY L domain-like 530 869 - -
Gabi3054g00033 1190 Gene3D - 175 333 IPR027417 -
Gabi3054g00033 1190 MobiDBLite consensus disorder prediction 1141 1157 - -
Gabi3054g00033 1190 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 179 - -
Gabi3054g00033 1190 SMART till_3 9 151 IPR000157 GO:0007165
Gabi3054g00033 1190 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00033 Gabi-Chr3054 253963 260142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00033 5 840 WRKY Transcription Factor Family AT4G12020 33.564 9.98e-101 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00033 - - psat:127076353 1276.15