Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00032 ATGTCTTCTTCTTCCTTTGCCAAAAAGTACGATGTATTCATTAGCTTCAGGGGTGAGGACACCCGAACCAATTTCACTAGCCATCTTCATAGTGCTCTCTGCCACAGCAAAATCGAAGCATACATTGATTATAATCTTAAAAAAGGAGATGAGGTTGGGCCTGCACTTAACGAAGCAATCAGGGACTCACATATATCACTCATCGTTTTCTCGATAAACTATGCTACATCAAAGTGGTGCTTGGAAGAACTCCTCCAAATACTCGAGTGCAGAAAACATCAAGGACAGGTAGTTATACCTGTGTTCTATGAAACAGATCCATCGGATGTACGTCATCAGAAAGGGAGTTACGAGAAAGCGTTCGCAAAACATGAGAGAGATCTAAGGAACAATAAATTCTACCATGATAAAGTGTCTAAGTGGAAAGCTGCTCTCACTGTAGCCGCTAATATATCTGGATGGGACTCTCGTACCCATAGGGATGATTCTGAAGTCATCCAAAACATTGTGAAAGATGTTTGGCAAAAGCTGTCCCTGATGTATCCTAATGAACTGAAAGGCCTTGTTGAAATTGATGAGAACAGTAAATCCATTGATTCATTACTCAATAAAGTTCCAAGAATTGGAATTTGGGGCATGGGTGGTATAGGTAAGACAACCATAGCTAGACACATGTTTGCCAAACACTTTCCACAATATGACAGTGTATGCTTCCTGGCAAATGTAAGAGAAGAATCAGAAAAGTTTGGACTAACATATACACGTGATAAGCTTCTCTTTGAGCTACTAAAGGAACCAATTACAACATCTCATGTTACTGGATCCACATTCATTAAGAGAAGGCTTAGCAGCAATAAAGTTTTCATTGTACTTGATGATGTGGATAGTTCTGCTCAATTAGAATATTTGTGTGATGAATTAGATGACCTTGAACATGATAGTAGACTCATTATAACAACAAGAAATAGGCATATGCTTAGTGGAAGAGTTGATGAGGTATATGAGGTCACTAAATGGGAGTTTCCAGAATCTGTAAAGCTTTTTAGCTTGGGAGCTTTCGAGCAAATTCGTCCTAAAGATGGTTTTGAGGATCTTTCAGAAAGGGCAGTTGCATATGCAGGAGGCATTCCATTAGCTTTAAAAGTATTGGGTTTACATTTTCATTCCAGAGATACTGAATTTTGGAAATGTGAATTGAATAAATTTGAGAGCAAGAAGGAATCCTTCAAGGAAATTCAAAACATGTTACAAGTAAGCTATAATGGATTACAAGAGCTACAACGGGAAATCTTTCTGGACATTGCATTCTTTTTCAAAGATGAAAATAAAGATGAAGTCGTAAGGATACTAGATGCGTGTGGTTTCTACCCTGCTAGTGGAATAAAAGTCCTTGAAGATAAAGCCCTTATAACTATTTCAAAGAGCAATAGAATACAAATGCATGACCTGCTACAAGAAATGGGTTTTGATATAGTTCGGAAAGAATTTAGCAGAGACCCAGGAAGACATAGCCGACTAAGGGATATTGAAGAAGTTTGTGATGTAATTAACAATAACAAGGGGACTGATGCAGTTGTAGGCATAACATTAGATTTGTCTCAAAAAGTAGATTTACACTTGAGAGCTGACACATTCAACATGATGACTAGTCTAAGATATCTTAAATTATATGTCCCATTGGGTAAGAAGAGGTCAACGACTGTGTACCCTCCTCATAAAGTTTTTATGTGGATGCATTATCGTTTGCCATTTTCGGATAAATTGAGGTACCTTGAATGGCATGGATACCCCTTGAAGTCTCTTCCACCACATTTTTGTGCTAAGCTGCTTGTTGAGATTCGCTTGCCACATAGCGATGTCAAATATCTTTGGCGCGACATGCAGGAACTTGTGAATTTAGAAGGAATGGACCTAAGTGAATGCAAGCAGTTAATAAAGCTCCCAGATTTGTCTGGCGCTTCAAAACTTAAATGGCTGTATCTCTCTGGCTGTGAAAGTTTACGCCATGTTCACCCATCTGTTTTTTCTAACGACACACTTGTTACCTTGCTATTGGATAGGTGCACAAAACTGAAAAGCCTTATATGTGAGAAGCATTTAAGATCTCTGGAGAAGATCAGTGTCAACGGCTGCTCAAGTCTGAAGGAAATTTCATTGTCCTCGGATTCAATTGAAAGGTTGAATTTAAGCAACGCAGGAATCGAAATATTGCACCCATCAATCGGTCGTCTAAGAAAGCTTGTGTGGCTCAACCTAGAAGGTTTAAGACTTGAAAATCTTCCAAATGAGTTGTCTTGCCTGACATCACTTACTGAGCTTTGGATTTCAAAATGCAGCATAGTAATTAAAGACAAGTTACATGTGCTATTTGGCGGCCTTCGATCTTTACAAATACTATATTTGAAAGACTGTCTTAATTTGTTTGCACTCCCTGACAATATCAGTGACTTATTATCATTATACGAATTAAGACTAGATGGAAGCAGTGTGATGAGTTTACCTTCAAGTATCAAGGATCTCTCAGGGCTAGAAATTCTGTCCTTAGAGAATTGCACGGAGCTTTGGCATCTGCCAGAGCTTCCTGAAAACATAAAGGAGTTTTATGCAGATAACTGCACATCATTGATGACAGTATCCACTTTAGGGACATTTTCAGAAAAAATGAACGGAAGGGAGAAATACATTTCTTTCAAGAATGTTATGAGATTGGATGAATCATCACTCGACCTTTTTATGGAAGGTGCACTATCAACAATGAAGATTGCTGCAATACACAATGTACAATTAAGAACAAGCGTTGTGCGAAACCAAAGCTACAGTTATTATAGCAGTGTTGAGGTTTGTTTACCAGGAAGCAGCGTCCCACGGTACTTTCGTTACCAAACAACAGGTTCATCAACCAGAACTACTGGAGTTCTTATCCGTTCCTACTCGTTGGGATTCATTTTCGCGGTCGTTGTTTCTCCATCCTATGGTAATGGTGCTAAAATCCAATGTCAAAGCTACTCTAAAGATGGAAGAAAGGTGGGATATGCATCTACATGGCATAATAAAACTGCTATGAATATGAAGTACGATCATGTTTATGTATGGTATGATCCGTTCCATTTTGACAGCATTCTCGGCAGTGATGAAAAAATGGTTTCTTTTGAATTCAGTGTTACAACTGATACTGGGGAACGCCATGGCTTGTTCGGTCCAAACAAATGTGGGGTCCGTCACTTATATTCATACTAG 3237 0.3874 MSSSSFAKKYDVFISFRGEDTRTNFTSHLHSALCHSKIEAYIDYNLKKGDEVGPALNEAIRDSHISLIVFSINYATSKWCLEELLQILECRKHQGQVVIPVFYETDPSDVRHQKGSYEKAFAKHERDLRNNKFYHDKVSKWKAALTVAANISGWDSRTHRDDSEVIQNIVKDVWQKLSLMYPNELKGLVEIDENSKSIDSLLNKVPRIGIWGMGGIGKTTIARHMFAKHFPQYDSVCFLANVREESEKFGLTYTRDKLLFELLKEPITTSHVTGSTFIKRRLSSNKVFIVLDDVDSSAQLEYLCDELDDLEHDSRLIITTRNRHMLSGRVDEVYEVTKWEFPESVKLFSLGAFEQIRPKDGFEDLSERAVAYAGGIPLALKVLGLHFHSRDTEFWKCELNKFESKKESFKEIQNMLQVSYNGLQELQREIFLDIAFFFKDENKDEVVRILDACGFYPASGIKVLEDKALITISKSNRIQMHDLLQEMGFDIVRKEFSRDPGRHSRLRDIEEVCDVINNNKGTDAVVGITLDLSQKVDLHLRADTFNMMTSLRYLKLYVPLGKKRSTTVYPPHKVFMWMHYRLPFSDKLRYLEWHGYPLKSLPPHFCAKLLVEIRLPHSDVKYLWRDMQELVNLEGMDLSECKQLIKLPDLSGASKLKWLYLSGCESLRHVHPSVFSNDTLVTLLLDRCTKLKSLICEKHLRSLEKISVNGCSSLKEISLSSDSIERLNLSNAGIEILHPSIGRLRKLVWLNLEGLRLENLPNELSCLTSLTELWISKCSIVIKDKLHVLFGGLRSLQILYLKDCLNLFALPDNISDLLSLYELRLDGSSVMSLPSSIKDLSGLEILSLENCTELWHLPELPENIKEFYADNCTSLMTVSTLGTFSEKMNGREKYISFKNVMRLDESSLDLFMEGALSTMKIAAIHNVQLRTSVVRNQSYSYYSSVEVCLPGSSVPRYFRYQTTGSSTRTTGVLIRSYSLGFIFAVVVSPSYGNGAKIQCQSYSKDGRKVGYASTWHNKTAMNMKYDHVYVWYDPFHFDSILGSDEKMVSFEFSVTTDTGERHGLFGPNKCGVRHLYSY 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00032 1078 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 720 IPR044974 GO:0006952
Gabi3054g00032 1078 Pfam NB-ARC domain 208 421 IPR002182 GO:0043531
Gabi3054g00032 1078 PRINTS Disease resistance protein signature 373 387 - -
Gabi3054g00032 1078 PRINTS Disease resistance protein signature 207 222 - -
Gabi3054g00032 1078 PRINTS Disease resistance protein signature 281 295 - -
Gabi3054g00032 1078 PRINTS Disease resistance protein signature 628 644 - -
Gabi3054g00032 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 434 IPR027417 -
Gabi3054g00032 1078 Gene3D - 6 178 IPR035897 -
Gabi3054g00032 1078 Gene3D - 341 424 IPR042197 -
Gabi3054g00032 1078 SUPERFAMILY L domain-like 480 887 - -
Gabi3054g00032 1078 Gene3D - 179 334 IPR027417 -
Gabi3054g00032 1078 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Gabi3054g00032 1078 ProSiteProfiles TIR domain profile. 8 177 IPR000157 GO:0007165
Gabi3054g00032 1078 SMART till_3 9 151 IPR000157 GO:0007165
Gabi3054g00032 1078 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 179 - -
Gabi3054g00032 1078 Gene3D Ribonuclease Inhibitor 723 889 IPR032675 -
Gabi3054g00032 1078 Gene3D Ribonuclease Inhibitor 509 722 IPR032675 -
Gabi3054g00032 1078 Pfam TIR domain 9 187 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00032 Gabi-Chr3054 237622 241923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00032 5 846 WRKY Transcription Factor Family AT4G12020 32.947 3.63e-96 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00032 - - psat:127076353 1271.14