Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00025 ATGGGACACCACTCTTGTTGCAATAAACAGAAGGTCAAAAGAGGGCTATGGTCACCTGAAGAAGATGAAAAACTCATTAACTACATCACAACTTATGGACATGGTTGCTGGAGTTCTGTCCCAAAACTTGCAGGTTTGAAGAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCAGCCCTCATTATCGAACTCCACAGCATTCTAGGCAATAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCCTTTCTCATGATCATGTTGTTCCTTCTTTTGCCACATTTTCTGATATTCACAGCCCCATCAATATTGGTTCTTTGGAAAGTTTATTTCCTTTAACTGCAAACCCTAATGTGATCCTAAACTTTCATCATCACCAAAACCAGCTATACCTTCCAACCCCATCTCCAATCCTACAAGGTTTTGATCATAATGATATTAAGGTAGACATTGACAATTATAATGCCAATTTCTTTCATAATCAGAATCCAATTCCAGAAACAGTACTACCATCCAATCCATCCTCTTATGAAGAAGATACATGGTCATTGGGTTGTGTAGCTCTTCATGATCTTAAACCAAATCAGGAAAATCAAATTAGTGAAATTACCAAAAGTGATACCACCCCACATTATGTTGTTGACAAATTCATCAACCCAACTGCATTGCAGCAATATGAATGTCACTTGGTGGAACCTATTGTGCCAAAAGTCACCGAAAGCATTGAGGATTATGTTTGTAGCATCCCAACTACATCTGCTTCCAAGGAACATGTGGGTCCAGAAAAAATTCAGTGTTACTCACACAGTAATTATCCGCTTCATCAAACTGTGACAGTCAATCAATTGGAGTACATTGATGCACTCATGTCATCATTGCCATACTCAACAACCTCATCATCAGTGTCAAGCAGTAAAATAGTCACAAACCCTATTATTCCTTCGGGATGGGAGCCATGA 1062 0.3898 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLKRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDHVVPSFATFSDIHSPINIGSLESLFPLTANPNVILNFHHHQNQLYLPTPSPILQGFDHNDIKVDIDNYNANFFHNQNPIPETVLPSNPSSYEEDTWSLGCVALHDLKPNQENQISEITKSDTTPHYVVDKFINPTALQQYECHLVEPIVPKVTESIEDYVCSIPTTSASKEHVGPEKIQCYSHSNYPLHQTVTVNQLEYIDALMSSLPYSTTSSSVSSSKIVTNPIIPSGWEP 353
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00025 353 Gene3D - 11 67 - -
Gabi3054g00025 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3054g00025 353 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Gabi3054g00025 353 Gene3D - 69 116 - -
Gabi3054g00025 353 PANTHER MYB DOMAIN PROTEIN 55 1 158 - -
Gabi3054g00025 353 CDD SANT 17 61 IPR001005 -
Gabi3054g00025 353 SMART sant 66 114 IPR001005 -
Gabi3054g00025 353 SMART sant 13 63 IPR001005 -
Gabi3054g00025 353 FunFam Myb transcription factor 69 116 - -
Gabi3054g00025 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3054g00025 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3054g00025 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3054g00025 353 FunFam MYB transcription factor 6 66 - -
Gabi3054g00025 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3054g00025 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3054g00025 353 CDD SANT 69 109 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi3054g00025 Gabi-Chr3054 185553 186854 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00025 1 118 MYB Transcription Factor Family AT3G13890 95.763 9.84e-81 248
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3054g00025 Myb_DNA-binding 8.2e-15 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00025 K09422 - gmx:100785147 530.791