Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00024 ATGGGACACCACTCTTGTTGCAACAAGCAGAAGGTCAAAAGAGGGCTATGGTCACCTGAGGAAGATGAAAAACTCATTAACTACATCACAACTTATGGACATGGTTGCTGGAGTTCTGTCCCAAAACTTGCAGGTTTGAAGAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCAGCCCTCATTATCGAACTCCACAGCATTCTAGGCAATAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGCATTCAAACATAAAGAAGAAACTGCTTTCTCATGATGTTGTTCCTTCTTTTGCCACATTTTCTGATATTCACAGCCCCAGCAATATTGGTTCAATGGAAAGTTTCTTTCCTTTAACTGCAAACCCTAATGTGATCCTAAACTTTCATCATCACCAAAACCAGCTATACCTTCCAACCCCATCTCCAATCCTACAAGGTTTTGATCATAATGATATTAAGGTAGACATTAACAATTATAATGCCAATTTCTTTTATAATCAGAATCCAATTCCAGAAACAGTACTACCATCCAATCCATCCTCTTACGAAGAAGATACATGGCCATTGGGTTCTGTAGCTCTTCATCTTAATCCAAATCAAGAAAATCAAATTACAAAAAATGATACCACCCCACATTATGTAGTAGACAAATTCATCAACCCAACTGCATTGCAGCAATATGAATGTCATTTGGTGGAACCAATTGTGCCAAAAGTCGGTGAAAGCTTTGAGGAACATGTGGGTCCAGCAAAAATTCAGTGTTATCCACCTAGTAATTATCCACATTACCAAACTGTGACAGCGAATCAATTGGAATACATTGATGCACTCATGTCATCATTGCCATCCTCAACAACCTCATCATCAGTATCAAGCAGTAAAATAGTCACAAACCCTATAATTCCTTCGGGATGGGAGTGA 1005 0.391 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLKRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWHSNIKKKLLSHDVVPSFATFSDIHSPSNIGSMESFFPLTANPNVILNFHHHQNQLYLPTPSPILQGFDHNDIKVDINNYNANFFYNQNPIPETVLPSNPSSYEEDTWPLGSVALHLNPNQENQITKNDTTPHYVVDKFINPTALQQYECHLVEPIVPKVGESFEEHVGPAKIQCYPPSNYPHYQTVTANQLEYIDALMSSLPSSTTSSSVSSSKIVTNPIIPSGWE 334
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00024 334 CDD SANT 69 112 IPR001005 -
Gabi3054g00024 334 Gene3D - 69 116 - -
Gabi3054g00024 334 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gabi3054g00024 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3054g00024 334 CDD SANT 17 61 IPR001005 -
Gabi3054g00024 334 FunFam MYB transcription factor 6 66 - -
Gabi3054g00024 334 Gene3D - 11 67 - -
Gabi3054g00024 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3054g00024 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3054g00024 334 SMART sant 66 114 IPR001005 -
Gabi3054g00024 334 SMART sant 13 63 IPR001005 -
Gabi3054g00024 334 FunFam Myb transcription factor 69 116 - -
Gabi3054g00024 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3054g00024 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3054g00024 334 PANTHER MYB DOMAIN PROTEIN 55 1 151 - -
Gabi3054g00024 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi3054g00024 Gabi-Chr3054 176184 177458 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00024 1 118 MYB Transcription Factor Family AT3G13890 94.068 1.58e-79 245
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3054g00024 Myb_DNA-binding 7.6e-15 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00024 K09422 - gmx:100785147 508.449