Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00009 ATGATGAAAGGTTTGATGTTTCACCAACAACAACAGCAACAACAACCAGTAGTGGAGGAGAACATGTCAAATTTGACTTGTGCATCCGGTGAAGCTAGTGTTTCATCAGGCAACAACAGAACCGAAATTGGTACAAGTTACCCTCAACAATATAACTTGGCTCCACCTGAACCAACTCAGACTCAACCAGTAAAGAGAAAGAGAAACCTTCCTGGCAACCCAGACCCTGATGCTGAGGTCATATCCATGTCCCCAAAGAGTCTTATGGCAACTAATAGGTTTTTGTGTGAGATCTGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCATAACTTGCCATGGAAGCTGAAGCAGAGAACAAGTAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAAACAACTTGTGTGCACCATGACCCATCAAGGGCCCTGGGGGATCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAGGTATGCGGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAAAGTGCAAGAGCCATCACAAGCACAACCAACCCTTCATCCTCTCATCACATAAATCTCCAAACCCAAACCCAAACCCAATTCAATCCCCAAGACCTTCACACTTTCTCATTGAAAAAAGAGCAACACCAGCATCAGCATCATCAGCAGCAGCAAAATTTCAATCTTAGGCCAGAAATACCCCCATGGCTTGGCCCACCTACAAGTGCTGATCTCTCCTCAACCTCATCAATCTTCTCACAAAGATTGGACCAAGAATTTTCACAAACCCATCACCGAGAAAACCCTAACCCTAGCCTTGGTCCCACTCTTCCAGCTGCTACTTACCAAACAACTCATTCCCCACACATGTCAGCTACAGCATTGTTGCAGAAAGCCGCTCAGATGGGTGCAACCATGAGCAGCAGAACTGGTTCCTCACCAACCATGCTCAGGCCCCACCAACAGACTCACGTGTCAGCTGATTCTTGTTTGAACTTGTCCTCACGTGACCAACAAGACCAGATGACACCATGTTCTACAACTACTACTGCTACCGCTACAGGTTTTGGCCATTGCTTAACACCTTATGGGAATAAAGCTGTTGCTGTCTCTTCTTCTGCTTCTGGTGTTCATCCTTCCCTTCTTCATGATGTTCTCAACTCTTTCTCTTCTTCTCCTTCTGCCTTTGAAGGAACAACTTTTGATGACACATTTGGTGGCATTCTTAATTCCAAGAATGATGAGAACTTGCATGATCACACCCTTTCAAAAACAACCACCGCCACCTATCTTGCTGATGACGGTGGCAGTGGCGGTGGCGGTGGTGGAAACGAAGGCTTGACCAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCATAGTGATATTCTCAGCATTGCTGGCATTGGAAACTGCATGAATGATCAACAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1608 0.4577 MMKGLMFHQQQQQQQPVVEENMSNLTCASGEASVSSGNNRTEIGTSYPQQYNLAPPEPTQTQPVKRKRNLPGNPDPDAEVISMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSTTNPSSSHHINLQTQTQTQFNPQDLHTFSLKKEQHQHQHHQQQQNFNLRPEIPPWLGPPTSADLSSTSSIFSQRLDQEFSQTHHRENPNPSLGPTLPAATYQTTHSPHMSATALLQKAAQMGATMSSRTGSSPTMLRPHQQTHVSADSCLNLSSRDQQDQMTPCSTTTTATATGFGHCLTPYGNKAVAVSSSASGVHPSLLHDVLNSFSSSPSAFEGTTFDDTFGGILNSKNDENLHDHTLSKTTTATYLADDGGSGGGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDQQNQSQKPWQG 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00009 535 MobiDBLite consensus disorder prediction 315 329 - -
Gabi3054g00009 535 SMART c2h2final6 170 190 IPR013087 -
Gabi3054g00009 535 SMART c2h2final6 94 116 IPR013087 -
Gabi3054g00009 535 SMART c2h2final6 135 165 IPR013087 -
Gabi3054g00009 535 FunFam protein indeterminate-domain 12-like 73 141 - -
Gabi3054g00009 535 Gene3D Classic Zinc Finger 148 228 - -
Gabi3054g00009 535 MobiDBLite consensus disorder prediction 29 79 - -
Gabi3054g00009 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Gabi3054g00009 535 MobiDBLite consensus disorder prediction 29 67 - -
Gabi3054g00009 535 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Gabi3054g00009 535 Gene3D Classic Zinc Finger 75 144 - -
Gabi3054g00009 535 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Gabi3054g00009 535 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 523 IPR031140 -
Gabi3054g00009 535 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gabi3054g00009 535 MobiDBLite consensus disorder prediction 310 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00009 Gabi-Chr3054 83677 86576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00009 1 358 IDZ Gene Family AT1G55110 57.527 2.60e-124 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3054g00009 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00009 K25870 - jre:109012370 693.345