Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00006 ATGAACAGAAACAACATCAACAACAACAACACCATCTCAAGAAATGGAAACAACAGCACCACCCAGGCTTGCGCGGCTTGTAAGTACCAACGCAGGAAGTGCGCTCCTGACTGCATTCTCGCACCTTATTTTCCTCACGATCGCCAACGACAATTCCTAAATGCCCATAAATTATTTGGTGTTAGCAGCATCACCAAAATCATCAAGGATCTTGACCCTCACGACAAAGACCAAGCCATGCGCACCATCATTTATCAATCTGACATGAGAGCTAGTGATCCTGTTGGTGGTTGCTACAGATACATTCAAGACCTTCAAGCCAATATTGAATATTACAGGGCTGAGCTTGAGCTTGTCCTTCAACAACTCGCCATTTTCAGGGCACAAGCTCAACAACAACACCAACACCATGTTTATGGTACAACAACAGCAGCAATCAACATCAATAATGTTGATGATGTTATGAATGCAGATCCATTGAGCTTATATAACTCGTCAGCTCATTACTCCTATCTTCAACAAATGACACAACAGGAACAGTACATCATGGCACACGAGACCAATGAAAATAACATCAATAACAACAACAACACCCCTTTGCAAGAACATGTTAATACCTGGGCCATGCAGAACTCCATGTCCCTTTCATCCTTGTCATTGCAGGGTCAAACTAGTAACGCAAGTGATGAATATGATCATAAGCCAATGCTTGATATACCTTCTGATGAAAGAAGTGAATTAGGATTCGAGTCTGAAGAACTAATCCACCGCAGTGATGAAGCAGTTTTGTTTAAGATAGACGATGCAGTAATAAAAGGAGAGGCTGACTGCATCCAACAATCTCAGGATCATGATCTGAAAGGTGCAGCAACTTTGTTTACTCTCACAAATTGTAGTAGCTGA 903 0.4186 MNRNNINNNNTISRNGNNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSSITKIIKDLDPHDKDQAMRTIIYQSDMRASDPVGGCYRYIQDLQANIEYYRAELELVLQQLAIFRAQAQQQHQHHVYGTTTAAININNVDDVMNADPLSLYNSSAHYSYLQQMTQQEQYIMAHETNENNINNNNNTPLQEHVNTWAMQNSMSLSSLSLQGQTSNASDEYDHKPMLDIPSDERSELGFESEELIHRSDEAVLFKIDDAVIKGEADCIQQSQDHDLKGAATLFTLTNCSS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00006 300 MobiDBLite consensus disorder prediction 218 241 - -
Gabi3054g00006 300 Coils Coil 102 122 - -
Gabi3054g00006 300 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
Gabi3054g00006 300 Pfam Lateral organ boundaries (LOB) domain 23 118 IPR004883 -
Gabi3054g00006 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 21 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00006 Gabi-Chr3054 53105 54955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00006 22 253 AS2 family AT3G13850 46.473 3.56e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi3054g00006 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00006 - - vum:124830493 396.741