Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3054g00001 ATGGGACTACAGCTGATTTTCCTGCTAATTAAGCTACATTTAGTTGTTAGTACTCAACAGCTTCATGAACATGCAGCCACCAATCTGCGCCATTCCAGAGCCAGAAGCCATTTTGTTAATGCATTCTCACCATCAAAATCATCTTCTGAAGTTCCTTCAAGTATTTCTCAACCACCTTCCCATTCATCTTCTGGTGTTCCTACAAGTATTGCACTTCCACCTTCCAAGTCAATTCTCAAAGCTCCTACAAAGAAATGGATGCATGGTCCTGTGGATTCTCCAATATCACATCATAAACATCACTATTCCAAAAGAAAGTCCAGCAAACCAACTCCAGGACCAGCCTACCCAATCCAGGCTCCCACTTACAGCCATCAAGGTCCTTCAGTCTTCAAATCGCAACCTCCTTTCTCTTCACCAAAGAGCAGGGATATCGATGCACCTGCACCTGCACCATCACCAGCAGTTCTGTCAGGCCACCTGGATGTGCCCTCTCCTTCACCTAGAATTTCACCTCTAGGATCATCATTGAAGAAGATAAAGACTCCACCACCTGCATATGCATTGGTTCTGCCACCTCCACCTCCTAATAAGGATTGCTTGTCAGTGATTTGCTCAGAGCCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTAAAACTCTGCATCAGCATTGCAATATACAAGTTTTTTCCTTTGGTTTCAAAGCTAGCTGAGGAAATTGCAGCAAGCGTTTGGCTCAACCATAGCCAAGTTCGCATTGTGGGAGCTGATGCAGCTAATCAGCAACTGGAGAAAACCACTGTTCTCATAAACTTGGTACCCATAGGAGTAAAATTTGAAGATACCACAGCATTTTTAATATATAAGAAATTCTGGCAAAGGGAGATCCTAATAGATGCTTCACTCTTTGGTGCTTATGAAGTACTTTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAACTCCCTCAGGTGTTTCTGGTATAGATGATGGGCCAAATCCTGGTCGTGACAACAATGGAACTATAGTGAAACCTTTAGGAGTAGATATCTCAAAAAAGAAAAATGAAGGGAGTAATGAAAGAATGATTGTTATAATTGTGTTATCATCAATTATTGCTTTTGTTCTATTCATTGGGCTTGCTTGGCTTTGTCTGTTGAAATGTGGTTCCTGTGTTCATGAACATAAACAAGTTCCAGATGGTTTAATTTCATCCTCTTCAAAACAATCAAGGGCTGCAAGGTCATTGTCTCATGGGGTCATGCAAGGTTCTGGATCACTATCCTTCAATTCTGGAACAATAACATATACAGGGTCTGCTAAGATTTTTACTTTGAGTGATTTAGAGAAAGCAACAAATAACTTCGATTCTTCAAGAATATTAGGAGAAGGTGGCTTTGGACTTGTTTACAAAGGTATTCTAAATGATGGGAGGGATGTAGCAGTGAAGATTCTCAAAAGAGATGATCAACGTGGTGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCCTCCACCATAGAAATCTAGTAAAATTGATAGGTATATGCATAGAGAAACATACTCGCTGCCTAGTCTATGAACTTGTCCCTAATGGAAGTGTGGAATCCCACTTACATGGTGCTGACAAGGAAACTGATCCACTGGATTGGAATGCCCGGATGAAGATTGCACTTGGTGCAGCTCGGGGATTGGCTTATCTGCATGAAGATTCAAATCCATGTGTCATACATCGGGACTTCAAGTCCAGCAATATCTTGTTGGAATATGATTTTATACCCAAGGTTTCAGATTTTGGATTGGCTAGAACAGCACTGGATGAGGGAAACAAGCACATCTCCACACATGTCATGGGAACATTTGGCTATTTAGCTCCTGAATATGCAATGACAGGCCATCTTCTTGTCAAAAGTGATGTTTACAGTTATGGAGTTGTACTCCTTGAGCTCCTAACTGGAAGAAAGCCTGTGGATTTGTCACAACCACCAGGTCAAGAAAATCTTGTGACTTGGGTTCGTCCACTTCTTACAAGTAAGGAGGGTTTACAGATGATCATAGACCCGGTTGTAAAGCCCCTCATTTCTGTTGATACTGTGGTAAAAGTTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTGTCTCAACGTCCTTTCATGGGTGAAGTTGTTCAGGCTTTGAAGCTGGTATGCAGTGAGTTTGAGGAAACAAGGATTTTTCAAGAAGAGGGTCTTCTTGTAACTGATGTGGAAGGGAAGTTTTCTGGAGTTTCAGTTGAGAGAGTGGACTTTTTGGAGGATCAAAAAACCCTATCTGGATATCAATCTGGTGAAGAAAAGGTAGCATTATCAGCTTCAGAGCTTCTCAGTAATTCAGGCCAGGAATTTGAGTCATTCAGGAGGTATTCTACTTCAGGGCCTCTAACTACTGGGAAGAAAAGGCAATTCTGGCAGAAGTTGAGAAGTTTGTCTAGAGGTAGCACCAGTGAACATGCATTTTCAACTAAACTATGGCCTGGATCCCATTAA 2562 0.4208 MGLQLIFLLIKLHLVVSTQQLHEHAATNLRHSRARSHFVNAFSPSKSSSEVPSSISQPPSHSSSGVPTSIALPPSKSILKAPTKKWMHGPVDSPISHHKHHYSKRKSSKPTPGPAYPIQAPTYSHQGPSVFKSQPPFSSPKSRDIDAPAPAPSPAVLSGHLDVPSPSPRISPLGSSLKKIKTPPPAYALVLPPPPPNKDCLSVICSEPLTYTPPGSPCGCVWPLQVKLCISIAIYKFFPLVSKLAEEIAASVWLNHSQVRIVGADAANQQLEKTTVLINLVPIGVKFEDTTAFLIYKKFWQREILIDASLFGAYEVLYVHYPGLPPSPPSTPSGVSGIDDGPNPGRDNNGTIVKPLGVDISKKKNEGSNERMIVIIVLSSIIAFVLFIGLAWLCLLKCGSCVHEHKQVPDGLISSSSKQSRAARSLSHGVMQGSGSLSFNSGTITYTGSAKIFTLSDLEKATNNFDSSRILGEGGFGLVYKGILNDGRDVAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVKLIGICIEKHTRCLVYELVPNGSVESHLHGADKETDPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLEYDFIPKVSDFGLARTALDEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLQMIIDPVVKPLISVDTVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEFEETRIFQEEGLLVTDVEGKFSGVSVERVDFLEDQKTLSGYQSGEEKVALSASELLSNSGQEFESFRRYSTSGPLTTGKKRQFWQKLRSLSRGSTSEHAFSTKLWPGSH 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3054g00001 853 Gene3D Phosphorylase Kinase; domain 1 439 540 - -
Gabi3054g00001 853 MobiDBLite consensus disorder prediction 329 352 - -
Gabi3054g00001 853 MobiDBLite consensus disorder prediction 42 153 - -
Gabi3054g00001 853 MobiDBLite consensus disorder prediction 122 140 - -
Gabi3054g00001 853 ProSitePatterns Protein kinases ATP-binding region signature. 471 493 IPR017441 GO:0005524
Gabi3054g00001 853 Pfam Protein tyrosine and serine/threonine kinase 468 738 IPR001245 GO:0004672|GO:0006468
Gabi3054g00001 853 FunFam Receptor-like serine/threonine-protein kinase ALE2 541 755 - -
Gabi3054g00001 853 Gene3D Transferase(Phosphotransferase) domain 1 541 757 - -
Gabi3054g00001 853 MobiDBLite consensus disorder prediction 42 71 - -
Gabi3054g00001 853 PANTHER OS01G0750732 PROTEIN 192 753 - -
Gabi3054g00001 853 SUPERFAMILY Protein kinase-like (PK-like) 444 738 IPR011009 -
Gabi3054g00001 853 CDD STKc_IRAK 471 739 - -
Gabi3054g00001 853 ProSiteProfiles Protein kinase domain profile. 465 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3054g00001 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Gabi3054g00001 853 FunFam receptor-like serine/threonine-protein kinase ALE2 438 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3054g00001 Gabi-Chr3054 6589 11450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3054g00001 197 848 Receptor kinase-like Gene Family AT5G56890 59.347 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gabi3054g00001 PK_Tyr_Ser-Thr 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3054g00001 - - gmx:100814040 1368.21