Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3052g00003 ATGGGTTACGACCCTCGTTTTTTTTGGTTTCACCTTCAATCCTTTTGGATTTCTTTGCTTATTATGATCATTTCTGTCTTTACCATTACCAAAGCCTTAAGATTTCCCTTAATTCAGAAGCCCAAGAAACCCAAGCTCCCACCAGGTCCCAAACCATGGCCTATAGTTGGTAATCTTCCTGAAATGCTAGCAAACAAGCCTGCATTTCGGTGGATACAAAAGTTGATGCAAGAAATGAACACTGAAATTGCATGTATCCGCTTAGGAAATGCCCATGTAATCACAATCACTAGCCCCACCATTGCATGTGAATTCTTGAGAAAACATGATGCAGATTTTGCATCAAGACCAATAAGCATGTCTACTCATATTGTCTCTAGTGGTTATGTGACTACAGCTCTTGTACCCTATGGGGAACAATGGAAGAAAATGAAGAAAATGGTTGCCAACCATTTGTTCTCCCCCATGAAGCATCAATGGCTTCAAGACAAAAGGACTGAAGAAGCAGATAACCTTATGTTCTACATCTACAACAAGTGCAAAAATGTGAATGATCGTGGCCTTGTGAATGTGAGGGATGTCGCACAACATTACTGTGGTAATGTGATCAGGAAAATGATTTTTAATGCAAGGTACTTCGGAAAGGGTAGGAAGAATGGAGGACCTGGTTTTGAGGAAGCAGAACATGTAGATGCCATTTTCATGTTGCTTAAATACATTTATGCCTTTTCTATTTCTGATTATATCTCATGGTTGAGTGCACTTGACTTGGATGGCCATCAGAGCAAACTAAAGAAGGCTATGAGAATCATGAACAAGTATCATGATCCCATCATTGAAGAGAGAATCAAACAATGGAATGATGGATCAAAGACCGATGAAGAGGACTTGCTGGATGTTATGATCTCATTGAAAGACCCATTGTTGACATCGAAGCAAATCAAGGCTCAAATTATAGAATTGATGATGGCAGTGGTGGATAATCCATCAAATGCAATTGAATGGGCTTTAGCAGAAATGATAAATCAGCCTGAGTTGCTTCAACGAGCTACGGAGGAATTGGACAATGTGGTTGGAAAACATAGACTGGTCCAGGAATCAGATATTCCTAAACTCAACTATGTGAAGGCTTGCGCAAGAGAAGCTTTTCGCCTTCATCCCATTGTACCTTTCAGTGTTCCCCATGCCTGTATGAATGACACAATGGTTGCCAATTACTTGATTCCAAAAGGTAGTCATATATTGCTAAGCAGAAGAGGTCTTGGGAGAAACCCAAAAGTTTGGAATGAGCCCCACAAGTTCAAACCAGAACGCCATCTCAAGAGTGATGGCTCTGATGTAGTTTTGTCACAGCCAAATTTGAAGTTCATAACATTCAGCACAGGAAGGCGTAGTTGTCCTGGAGTGACGCTTGGCACCACAATGACTATAATGTTATTTGCTAGGTTGATCCATGGCTTCACTTGGAGTGCACCTCCCAATGTATCAAGCATCAATCTTGCGGAGTCCAAGGATGGTACACTTCTTGCTGAGTCACTTGTGGCAGTTGCAAAGCCAAGATTAGCAATGGAGTTGTATCACCTATGA 1587 0.4121 MGYDPRFFWFHLQSFWISLLIMIISVFTITKALRFPLIQKPKKPKLPPGPKPWPIVGNLPEMLANKPAFRWIQKLMQEMNTEIACIRLGNAHVITITSPTIACEFLRKHDADFASRPISMSTHIVSSGYVTTALVPYGEQWKKMKKMVANHLFSPMKHQWLQDKRTEEADNLMFYIYNKCKNVNDRGLVNVRDVAQHYCGNVIRKMIFNARYFGKGRKNGGPGFEEAEHVDAIFMLLKYIYAFSISDYISWLSALDLDGHQSKLKKAMRIMNKYHDPIIEERIKQWNDGSKTDEEDLLDVMISLKDPLLTSKQIKAQIIELMMAVVDNPSNAIEWALAEMINQPELLQRATEELDNVVGKHRLVQESDIPKLNYVKACAREAFRLHPIVPFSVPHACMNDTMVANYLIPKGSHILLSRRGLGRNPKVWNEPHKFKPERHLKSDGSDVVLSQPNLKFITFSTGRRSCPGVTLGTTMTIMLFARLIHGFTWSAPPNVSSINLAESKDGTLLAESLVAVAKPRLAMELYHL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3052g00003 528 FunFam Cytochrome P450 9 39 524 - -
Gabi3052g00003 528 CDD CYP79 81 521 - -
Gabi3052g00003 528 Gene3D Cytochrome P450 39 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 77 96 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 198 216 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PRINTS E-class P450 group I signature 101 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 SUPERFAMILY Cytochrome P450 47 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 PANTHER CYTOCHROME P450 98A9 19 527 - -
Gabi3052g00003 528 Pfam Cytochrome P450 47 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi3052g00003 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3052g00003 Gabi-Chr3052 33892 36184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3052g00003 14 526 Cytochrome P450 AT5G05260 52.772 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3052g00003 - K14984 gmx:100787378 772.311