Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3049g00001 ATGTCGCAGCGGTCGGCACCGGCGCCGTTTTTGTCGAAGACGTATCAGTTGGTGGAGGATCCGACCACCGACGACGTGATTTCGTGGAGCGAAAGTGGCAACACTTTTGTGGTGTGGAAACATGCTGATTTCGCTAAGGATTTGCTTCCCAAGTACTTTAAGCACAACAACTTCTCAAGCTTTGTTCGCCAGCTCAACACCTATGGATTCAGAAAAATCGTTCCTGACAAATGGGAATTCGCCAACGAGTATTTCAAGCGAGGACAGAAGGAGCTTCTCGCCAAGATCAGTCGGCGGAAGACGGTGGTCCAATCGCCGGCAACCGGAAAATCCGGAGGCGGTGGCGGAAACTCCGCGTCGAACTCTGGCGGCGACGACATGGGGTCGACATCGACGGGATCTGTGGAGACAACGACACACTGCGGCGATTTATCGGGCGAGAACGATAAATTGAAGAAGGACAACGAGAAATTGAGCTGTGAGCTGGCGCGGGCGAAGCAGCAGTGCGAGGAGCTGGTAGCTTTTCTGAGGGACACTCTCAATGTGGGCCCTGATCAGATAAACCGCATCATTCGGCAAGGAACTTGTGGGTCCAGCAACGATGCTGTGCGTTTTGATGATAACAATAATGATAATGACGAAAATGTGTTAGGTGAATGTGAATGTGAAGGTGAAGGTGGAGAGAGTTTGAAACTGTTTGGGGTTTGGTTGAAGGCAGAGGAAGGGAAAGAAAAAATGAAGATTGATGCTGCCAATGGTAACTGCCGCAAGAGAGGGCGCGAAGACCCAATGGGTGCTGCTGCTAAGGAGTTGAAGACTGTTGTCTAG 828 0.5109 MSQRSAPAPFLSKTYQLVEDPTTDDVISWSESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLAKISRRKTVVQSPATGKSGGGGGNSASNSGGDDMGSTSTGSVETTTHCGDLSGENDKLKKDNEKLSCELARAKQQCEELVAFLRDTLNVGPDQINRIIRQGTCGSSNDAVRFDDNNNDNDENVLGECECEGEGGESLKLFGVWLKAEEGKEKMKIDAANGNCRKRGREDPMGAAAKELKTVV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3049g00001 275 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Gabi3049g00001 275 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3049g00001 275 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 193 IPR027725 -
Gabi3049g00001 275 Gene3D - 138 179 - -
Gabi3049g00001 275 MobiDBLite consensus disorder prediction 103 142 - -
Gabi3049g00001 275 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3049g00001 275 FunFam Heat stress transcription factor B-4 2 100 - -
Gabi3049g00001 275 Gene3D - 2 101 IPR036388 -
Gabi3049g00001 275 MobiDBLite consensus disorder prediction 256 275 - -
Gabi3049g00001 275 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3049g00001 275 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3049g00001 275 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3049g00001 275 Coils Coil 141 175 - -
Gabi3049g00001 275 MobiDBLite consensus disorder prediction 103 148 - -
Gabi3049g00001 275 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3049g00001 Gabi-Chr3049 27397 30216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3049g00001 2 243 HSF AT4G36990 55.556 2.50e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3049g00001 HSF_DNA-bind 2.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3049g00001 K09419 - gmx:100801897 368.237