Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3044g00002 | ATGGAGGAGAGGAAGTACGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGGAAGTCTCTAGGTGGCCACATCAGGACTCATATGAGTGAACATTCAACTCAAGCCAATGAACAGAGAAGTAATGCTGCTATGCTCAAGTTTGATGCTGGGAGAAAGAGGAAGAGAGATTTAGGGTCTGGAGCTGGTGCTAGTGGTGATGATGGTGATGGTGATTGTGGGAACCTCATTTATGGCCTCAGAGAGAACCCCAAGAAAACCACAAGGTTTGTGCACTCCAATGCCACTTTGCAACAGGAGAAGTTCTGCAAAGAATGTGGGAAAGGTTTTCCATCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAAAGGGACAAGGGAAGCAACAGGTTTGAGAACAATTCTGGTTTCAGTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGATACTGAGACTTCTGCTCCAACTCATCCAAGGAGATCCAAGAGAATGAGGTTCAAGACCCTTGGTAACCATCATCCCCATTCTTCTGTTCCATTGACAAATAATGGTTCTTCTTCTGTGTCTGAGGTTGAGCAGGAACAAGAAGAGGTAGCTAGGTGCTTGATGTTGTTGTCCAAAGATTCTAGCCACAAGGGTCGTTTTGCTTTGGTTACAGAGTCTTCTGATAACAACTCTGTTGTTCTAGAGGCAAAATCACCTTCTGTTGATACAAGGGTTACTATCAAGATTGGTAAGAACTCTGTGTCCAAAGCTTATGAGCTTGTGGAGAAGAAGTTGCATAAGGATATGAAGTTAAAGTCTGCTGAGATTGATTATGCTTCTGATAATTCAGATTCTGGGTATTTCAGATATGGTCCCAAAAAAGAAGACTCGGATGATTCAAATGATGGGTTTTTCATGAATGAAGCTAAGTCTTCAAAAGTGGGAGACATGTCTGGGTTTGAGGATTATGATGTTGAATCGAGGAAGATGCTCAGCAGAGGAAGAAACAGAAAGAATGAATTTAAGAAATTGGTTTTGAAGGATTCAAGCAGGAAGACAGCAAATGGTTTTACCAATGGTGAAATCTATGAGCATAGAGGAAAAGGGTGGAAGTATGAGTGCTTGACCAGTGAAAGGGATAATATTAATGAATCTGATGATTCAGCATATGAGAGTGATGGAAACAGCACAGATACTGATTCTTATCCTGCTCCAAAGCCTCACAACAGCAAGAATCTCAATGGAAAGAAGTCTAGCAAGGGAAAGAAGAAATTGAAGTCAAAGAATAGCAAGGATCATGAGTGCCCAATCTGCAACAAAATCTTCAGGTCAGGCCAAGCCTTGGGTGGTCACAAAAGATCCCATTTTATTGGAGGTTCTGAAGAAAACACTCTGGTGATTAGACCAGGTGCTCCTGCTGTTCCTTGCCTAATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG | 1461 | 0.4223 | MEERKYVCKYCSKRFPCGKSLGGHIRTHMSEHSTQANEQRSNAAMLKFDAGRKRKRDLGSGAGASGDDGDGDCGNLIYGLRENPKKTTRFVHSNATLQQEKFCKECGKGFPSLKALCGHMACHSERDKGSNRFENNSGFSEKQKLVMDSQSDTETSAPTHPRRSKRMRFKTLGNHHPHSSVPLTNNGSSSVSEVEQEQEEVARCLMLLSKDSSHKGRFALVTESSDNNSVVLEAKSPSVDTRVTIKIGKNSVSKAYELVEKKLHKDMKLKSAEIDYASDNSDSGYFRYGPKKEDSDDSNDGFFMNEAKSSKVGDMSGFEDYDVESRKMLSRGRNRKNEFKKLVLKDSSRKTANGFTNGEIYEHRGKGWKYECLTSERDNINESDDSAYESDGNSTDTDSYPAPKPHNSKNLNGKKSSKGKKKLKSKNSKDHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPGAPAVPCLIDLNLPAPVDE | 486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3044g00002 | 486 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 433 | 453 | IPR013087 | - | |
| Gabi3044g00002 | 486 | Gene3D | Classic Zinc Finger | 82 | 159 | - | - | |
| Gabi3044g00002 | 486 | Gene3D | Classic Zinc Finger | 1 | 59 | - | - | |
| Gabi3044g00002 | 486 | MobiDBLite | consensus disorder prediction | 411 | 425 | - | - | |
| Gabi3044g00002 | 486 | Pfam | C2H2-type zinc finger | 6 | 31 | - | - | |
| Gabi3044g00002 | 486 | Pfam | C2H2-type zinc finger | 103 | 124 | - | - | |
| Gabi3044g00002 | 486 | Pfam | C2H2-type zinc finger | 431 | 453 | - | - | |
| Gabi3044g00002 | 486 | MobiDBLite | consensus disorder prediction | 177 | 195 | - | - | |
| Gabi3044g00002 | 486 | SUPERFAMILY | beta-beta-alpha zinc fingers | 102 | 453 | IPR036236 | - | |
| Gabi3044g00002 | 486 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 101 | 128 | IPR013087 | - | |
| Gabi3044g00002 | 486 | MobiDBLite | consensus disorder prediction | 381 | 430 | - | - | |
| Gabi3044g00002 | 486 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 486 | - | - | |
| Gabi3044g00002 | 486 | SUPERFAMILY | beta-beta-alpha zinc fingers | 2 | 33 | IPR036236 | - | |
| Gabi3044g00002 | 486 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 33 | IPR013087 | - | |
| Gabi3044g00002 | 486 | MobiDBLite | consensus disorder prediction | 386 | 410 | - | - | |
| Gabi3044g00002 | 486 | MobiDBLite | consensus disorder prediction | 125 | 196 | - | - | |
| Gabi3044g00002 | 486 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
| Gabi3044g00002 | 486 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 103 | 123 | IPR013087 | - | |
| Gabi3044g00002 | 486 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 431 | 453 | IPR013087 | - | |
| Gabi3044g00002 | 486 | MobiDBLite | consensus disorder prediction | 133 | 157 | - | - | |
| Gabi3044g00002 | 486 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
| Gabi3044g00002 | 486 | SMART | c2h2final6 | 431 | 453 | IPR013087 | - | |
| Gabi3044g00002 | 486 | SMART | c2h2final6 | 101 | 123 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3044g00002 | Gabi-Chr3044 | 13235 | 14788 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3044g00002 | 1 | 486 | C2H2 Transcription Factor Family | AT1G26610 | 42.857 | 7.47e-100 | 306 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Gabi3044g00002 | zf-C2H2_6 | 3e-07 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3044g00002 | - | - | gmx:100805520 | 577.4 |