Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3043g00001 ATGTCCTCAAAATACGACTTCGTAAAGGATCTTAATCCGACGAAAGAAGAGTGGAGGATTAAAGTGCGTGTAGTTAGGTGTTGGAAGGTTCCCAGTTTTAATCAAAAAGATTTTGATGACAATGTGGATATGGTTTTGGTTGAGGAACGGGGTGGAAGGATCCATGCTACGACCAAGGGTACTTTGCAGGTTCAGAAGAAAATTCGTGAGGGTGATGCTTATTTTATAAAAAAATTTGGAGTTGGGTTGAATATGGGTAATTTCAGGCCAACACGGCATGAATATTGTCTGTCTTTCAACTTGAGGACGGACATGAAATCCATTGTTGATGCTACGATCCCCGAGCGTGGTTTTGATCTTGCTGAGTTTGACGTTATTGAGAAAGAATCCTCTGACTCTCCTTATTTAATAGGTGATGGGATTGGTGTATTGTGTTATTCGCTTTCAATTAAGATTTTGTATATAGGACGTAAGGCTGAAACCCATGTTATTTGTTGTGTAGACGTCATTGGTTTGCTGTCTGGAATTGGGGAAGTACGTGAACATGTCATCTCTGGTAGGAATACAAAAATGGTTGTCGTGGAGCTTGACAACCTGAGGCTTTCCGGTGATCTGATGCAAAGTAGTCAGATGTTGACTCAGTTGTCCAGCCAATCTTCATATTCTTATGAAAATGATTTTCTCAAGGATACAGAGAGGAAATTTCTGACTGATATTAAGAATTGCATAGATGCTACTACTTGCATTACTTATGGAACTGTAAAATCCATCGAAAGTAAATACAACTGGTGGTACAAGTCCTGTAAGAAATGTCCATATTCAGTGTGCGAAGATTTTGAGAAATGGTATTGTAAGAACTGTCAGAAACATTGGAATGAATATACTCCGAAAGTTGTTGATAACACGGATTCTGCTTCTTTCGTACTATTTGATAGAGACTGTCTTTCTTTATTAGGAGTGAGTGCTGCTGAATTGCGCAAGCAACATTTTAAGCGGGGTGCAGATTTAGAACATTATCTGGAAGAGTTGAACGTTCTTAAAGATAGATCTATGTTGTTTAAAGTGAATGTCAAAATTAGCAATTTGAACTCATATAGTGAGCCAAAATATCATGTGGCCAAAGTTTGCATCAGTGAAAGTATTATCACATCATTTCTGAAGACCACGGTGGACCCAAATGATGATTCTGTATTTGACAGTCCTTCTGATGATAATATTATGTCGATAGGGTCAGGAAAAGCTGTGATCAACGTGTGGATTTACCAGTAA 1269 0.3838 MSSKYDFVKDLNPTKEEWRIKVRVVRCWKVPSFNQKDFDDNVDMVLVEERGGRIHATTKGTLQVQKKIREGDAYFIKKFGVGLNMGNFRPTRHEYCLSFNLRTDMKSIVDATIPERGFDLAEFDVIEKESSDSPYLIGDGIGVLCYSLSIKILYIGRKAETHVICCVDVIGLLSGIGEVREHVISGRNTKMVVVELDNLRLSGDLMQSSQMLTQLSSQSSYSYENDFLKDTERKFLTDIKNCIDATTCITYGTVKSIESKYNWWYKSCKKCPYSVCEDFEKWYCKNCQKHWNEYTPKVVDNTDSASFVLFDRDCLSLLGVSAAELRKQHFKRGADLEHYLEELNVLKDRSMLFKVNVKISNLNSYSEPKYHVAKVCISESIITSFLKTTVDPNDDSVFDSPSDDNIMSIGSGKAVINVWIYQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3043g00001 422 SUPERFAMILY Nucleic acid-binding proteins 232 375 IPR012340 -
Gabi3043g00001 422 CDD RPA1_DBD_C 248 375 IPR047192 -
Gabi3043g00001 422 Gene3D - 7 111 IPR012340 -
Gabi3043g00001 422 PANTHER OS03G0429900 PROTEIN 253 364 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi3043g00001 422 Pfam Replication factor-A C terminal domain 250 375 IPR013955 -
Gabi3043g00001 422 Pfam Domain of unknown function DUF223 44 133 IPR003871 -
Gabi3043g00001 422 SUPERFAMILY Nucleic acid-binding proteins 6 110 IPR012340 -
Gabi3043g00001 422 Gene3D - 217 381 IPR012340 -
Gabi3043g00001 422 CDD RPA1_DBD_A_like 19 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3043g00001 Gabi-Chr3043 5027 7293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3043g00001 1 375 Core DNA Replication Machinery Family AT5G08020 20.507 7.81e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3043g00001 - - bvg:104885244 180.259