Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi303g00006 ATGGAGGTGGTGGATAAGCTGAAGTTGGCGAATATGAAGGGGGAGGAGGATATAAGGATGGTGGATAGGGAGATGAAGATGCTTCCAATAAAGTTTGTGAGGAAATATGGAGAAAGCTTACCAAACTCCATACTTCTCAAGCTTTCAAGCAGTGCAGAATGGACAGTAAACTTGGAGAAACATGATGGTAGAGTTTGGCTTCAAAATGGTTGGAAAGAATTTGTGGAGTATCACAATCTAGCTTATGGGCACTTATTGGTTTTCAGATATGAAGGAACATCTCATTTTCATGTATTCATCTTTGACCCGAGTACCATGGAAATTGACTACCCCCTCTTAGATCCTAAAAGGGCCTGCAATGGTGAACATAAACCAAGTAAGAAACGGAGAACGAATGAAAATAGTAACAAATATGACAGTTATTCCAATTTGCAAGACATTTCTTTTCATTCAACAAGTCAAAGACGAGAAAGACATGGTTTGTTGAAGAATCTAAGTGAAATGTCATCCAATACTTCCTTCGCGGTGGAAATAAAACCAAGGCACTTAAGGAAATACATTGCCTTGCCAAAAGGCTCTCTGAAGGGCTACGTCAAACCTGGTGGACAAAATGTTACGCTGCTGGTTGGTAACAGATCATGGAAGGTTAATTTGATCTATTACCCAAAGAAACCAATGACTTGCTTCTCTGCACGTTGGTTAATTTTCTCAAGGGAAAATGATTTAAAAGTAGGAGATGTTTGCTTGTTCGAGCTGTTAGAGTGTAGTGATGATGACTTGCTTAAGGGAAATGATGAAAAGTTTGATGATACCTTTGCAAAGGGTATCGTCAGCTTTTTGAAATGTTATTTGAGCATAGGAGGGTGTCTTAGTACATGGCTGAAAGAGATAGAACTTTAA 900 0.39 MEVVDKLKLANMKGEEDIRMVDREMKMLPIKFVRKYGESLPNSILLKLSSSAEWTVNLEKHDGRVWLQNGWKEFVEYHNLAYGHLLVFRYEGTSHFHVFIFDPSTMEIDYPLLDPKRACNGEHKPSKKRRTNENSNKYDSYSNLQDISFHSTSQRRERHGLLKNLSEMSSNTSFAVEIKPRHLRKYIALPKGSLKGYVKPGGQNVTLLVGNRSWKVNLIYYPKKPMTCFSARWLIFSRENDLKVGDVCLFELLECSDDDLLKGNDEKFDDTFAKGIVSFLKCYLSIGGCLSTWLKEIEL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi303g00006 299 SUPERFAMILY DNA-binding pseudobarrel domain 170 257 IPR015300 -
Gabi303g00006 299 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Gabi303g00006 299 PANTHER B3 DOMAIN-CONTAINING 22 255 - -
Gabi303g00006 299 SMART B3_2 18 104 IPR003340 GO:0003677
Gabi303g00006 299 SMART B3_2 174 264 IPR003340 GO:0003677
Gabi303g00006 299 CDD B3_DNA 173 252 IPR003340 GO:0003677
Gabi303g00006 299 Pfam B3 DNA binding domain 22 102 IPR003340 GO:0003677
Gabi303g00006 299 Pfam B3 DNA binding domain 168 254 IPR003340 GO:0003677
Gabi303g00006 299 SUPERFAMILY DNA-binding pseudobarrel domain 25 104 IPR015300 -
Gabi303g00006 299 CDD B3_DNA 27 102 IPR003340 GO:0003677
Gabi303g00006 299 Gene3D - 17 105 IPR015300 -
Gabi303g00006 299 MobiDBLite consensus disorder prediction 119 140 - -
Gabi303g00006 299 Gene3D - 153 261 IPR015300 -
Gabi303g00006 299 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi303g00006 Gabi-Chr303 127146 142187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi303g00006 19 114 B3 DNA Binding Superfamily AT1G49475 40.625 1.31e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi303g00006 B3 4.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi303g00006 - - aprc:113849508 258.07