Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi303g00004 ATGTCCTCAAAATACGACTTCGTAAAGGATCTTAATCCGACGAAAGAAGAGTGGAGGATTAAAGTGCGTGTAGTTAGGTATTGGAAGGTTCCCAGTTTTTATCAAAAAGATTTTGATGACAATGTGGATATGGTTTTGGTCGACGAACGAGGTGGAAGGATCCATGCTACGGCCAAGGGTACTTTGCAGGTTCGGAAGAAAATTCATGAGGGTGATGCTTATTTTATAAAAAAATTTGGAGTTGGGTTGAATACGGGACGTAATGCTGAAACCCATGTTATTTGTTGTGTAGACGTCATTGGTTTGCTGTCTGGAATTGGGGAAGTACGTGAACATGTCATCTCTGGTAGGAATACAAAAATGGTTGTCGTGGAGCTTGAAAACCTGAGGGGTCAGAAACTTGAATGCACTTTGTGGGAGTCATACGTAGACGAGGTCCAAACTTTCTTAGCAAAGAATCAGAGTGCTCAAAATGTTATAATACTTCAGCTTGCAAGGATAAACAGTTTTAGGGGAAAGATTGGAATAGCTAATACAAAGTATACAACGAAAATTCTTTTTGATTCCAATATACCTGAGATCGTAGAGTTCAAAAAAAGGCTTTCCGGTGATCTGATGGAAAGTAGTCAGATGTTGACTCAGTTGTCCAGCCCATCTTCATATTCTTATGAAAATGATTTTCTCAAGGATACAGGGAGGAAATTTCTTACTGATATTAAGAATTGCATAGATGCTACTACTTGCATTACTTATGGAACTGTAAAATCCATCGAAAGTAAATACAACTGGTGGTACAAGTCCTGTAAGAAATGTCCATATTCAGTGTGCGAAGATTTTGAGAAATGGTATTGTAAGAACTGTCAGAAACATTGGAATGAATATACTCCGAAGTTCAGTGTTCAAGTCAGAGTTGTTGATAACACGGATTCTGCTTCTTTCGTACTATTTGATAGAGACTGTCTTTCTTTATTAGGAGTGAGTGCTGCTGAATTGCGCGAGCAACATTTTAAGCGGGGTGCAAATTTAGAACATTATCCGGAAGAGTTGAACGTTCTTAAAGATAGATCTATGTTGTTTAAAGTGAATGTCAAAATTAGCAATTTGAACTCATACAGTGAGCCAAAATATCATGTGGCCAAAGTTTGCATCAGTGAAAGTATTATCACATCATTTCTGAAGACCACGGTGGACCCAAATGATGATTCTGTATTTGACAGTCCTTCTGATGATAATATTATGTCGATAGGGTCAGGAAAAGCTGTGGATGTTCAGAGTCAAACCTGTGATAGTACTGATGATGCTGAATAA 1308 0.3807 MSSKYDFVKDLNPTKEEWRIKVRVVRYWKVPSFYQKDFDDNVDMVLVDERGGRIHATAKGTLQVRKKIHEGDAYFIKKFGVGLNTGRNAETHVICCVDVIGLLSGIGEVREHVISGRNTKMVVVELENLRGQKLECTLWESYVDEVQTFLAKNQSAQNVIILQLARINSFRGKIGIANTKYTTKILFDSNIPEIVEFKKRLSGDLMESSQMLTQLSSPSSYSYENDFLKDTGRKFLTDIKNCIDATTCITYGTVKSIESKYNWWYKSCKKCPYSVCEDFEKWYCKNCQKHWNEYTPKFSVQVRVVDNTDSASFVLFDRDCLSLLGVSAAELREQHFKRGANLEHYPEELNVLKDRSMLFKVNVKISNLNSYSEPKYHVAKVCISESIITSFLKTTVDPNDDSVFDSPSDDNIMSIGSGKAVDVQSQTCDSTDDAE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi303g00004 435 PANTHER OS03G0429900 PROTEIN 8 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi303g00004 435 SUPERFAMILY Nucleic acid-binding proteins 232 381 IPR012340 -
Gabi303g00004 435 SUPERFAMILY Nucleic acid-binding proteins 6 87 IPR012340 -
Gabi303g00004 435 Gene3D - 81 208 IPR012340 -
Gabi303g00004 435 Gene3D - 226 387 IPR012340 -
Gabi303g00004 435 CDD RPA1_DBD_A_like 19 86 - -
Gabi303g00004 435 Pfam Replication factor-A C terminal domain 250 381 IPR013955 -
Gabi303g00004 435 CDD RPA1_DBD_B_like 98 201 - -
Gabi303g00004 435 MobiDBLite consensus disorder prediction 414 435 - -
Gabi303g00004 435 CDD RPA1_DBD_C 248 381 IPR047192 -
Gabi303g00004 435 SUPERFAMILY Nucleic acid-binding proteins 97 204 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi303g00004 Gabi-Chr303 94592 96844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi303g00004 1 381 Core DNA Replication Machinery Family AT5G08020 19.725 2.19e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi303g00004 - - adu:107490971 256.914