Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3038g00004 ATGGGGGAGGAATCTAGACTTCTTAAAGAAAGCACAACAATAGATGACAACATGGAGGAAGAAGTTGAAGGAGTTGAAGAAAGAGACCCAGAAAACAATCCACTTAATGAGCCACTTCTCAAGAGGAACAGGACTTTATCTTCCAATCCACTTGCTCTTGTTGGAGCAAAAGTTTCATACATAGAAAGCTTGGACTATGAGATCAATGAGAATGATCTATTCAAGCAAGATTGGAGGAGTAGATCAAGAGCTCAAGTGTCTCAATACATATTCTTGAAATGGTCTCTTGCATTCCTTGTTGGACTTTTTACTGGTATTATAGCCACTCTTATCAACCTTGCTGTTGAGAACATTGCAGGGTACAAGCTTCTCACTGTTGTTAGTTACATCCAGACAGAAAGGTACTTGTCAGGTTTCCTATATTTCACGGGCATGAATTTCCTTTTGACATTTGTTGCTGCTATGCTGTGTGTGTGTTTTGCACCAACTGCTGCTGGTCCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTATGGTGCTACAACATTGTTTGTCAAGATAATTGGAAGCATTGGAGCTGTATCAGCAGGCCTAGATTTAGGAAAAGAAGGGCCATTGGTACATATAGGAAGCTGCATTGCATCATTACTAGGCCAAGGAGGACCTGACAATTACAGGATCAAATGGGGGTGGCTGAGATATTTCAACAATGATAGAGACCGTCGTGATCTCATTACATGTGGTGCTTCTTCAGGTGTTTGTGCAGCTTTCAGGGCCCCTGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTTGCAACTTGGTGGAGAAGTGCTCTCCTTTGGAGAACATTTTGTAGCACAGCTGTGGTTGTGGTTGTGCTAAGGGCCTTCATTGAACTATGTCATGAAGGGAAATGTGGTCTTTTTGGTGAAGGAGGGTTGATCATGTATGATGTGAGCAATGTCACTGTTAGTTACCATGTTATGGATATCATCCCTGTTGCAATCATTGGAATCATTGGTGGTGTATTGGGAAGCCTTTACAACTATCTTCTCCACAAGGTCCTTCGTCTCTACAATCTCATCAATCAGAAAGGAAAAATATATAAGCTCCTCCTCAGTCTTGCAGTTTCACTCTTCACATCAGTGTGCCAATATGGTCTACCATTCCTAGCAAAATGCAAACCTTGTGATTCATCACTTCCTGAGTCTGTCTGCCCCACAAATGGGAGGTCTGGAAATTACAAACAATTCAACTGTCCAAATGGCTACTACAATGATCTTGCTACTCTACTCCTTACAACTAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTACTCATGAATTCCAAGCCTCCTCCATCCTAATTTTCTTTGTACTCTATTGCATATTAGGACTAATTACCTTTGGAATTGCTGTGCCGTCTGGTCTCTTTCTCCCAATCATACTCATGGGTTCAGGTTATGGCAGGCTTCTTGGCATCATCATGGGACCTCATACAAACATTGACAAAGGGTTGTTTGCAGTTCTTGGTGCAGCCTCCCTCATGGCTGGATCTATGAGAATGACTGTGTCCCTCTGTGTGATATTTCTTGAACTAACCAACAACCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAGCTTCAACCCAAGTATCTATGAGATCATACTACACTTAAAAGGCCTTCCTTTCTTGGATGCAAACCCTGAACCATGGATGAGAAACATCACAGTGGGAGAGCTTCTTGATGTAAAGCCAGCAGTGGTTACCCTTCAAGGAGTAGAAAAGGTAGAAAATATAGTCAATGCCTTGAAAGACACTACACATAATGGTTTTCCTGTCATGGATGATGGGGTAGTGCCACCAACAGGACTAGCCAATGGGATGAAAGAACTGCATGGAGTGATTCTAAGAGCACACCTCATCCAAGTGCTGAAGAAAAAGTGGTTCTTGAAAGAGAGAAGGAGAACTGAGGAATGGGAAGTGAGAGAGAAATTCACTTGGGTAGAGCTGGCTGAGAGAGAAGGGAATATTGAAGAGGTGGCAGTGACAAGAGAAGAAATGGAGATGTTTGTTGATTTACATCCTCTCACCAATACAACTCCATTTACAGTACTAGAGAGCATATCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTAGGACTTCGCCATATGCTTGTTGTACCCAAGTATCAAGCATCTGGGGTATCTCCTGTAATTGGGATCTTGACAAGGCAAGATCTATTGGCCTACAACATTCTGCAAGTCTTTCCTCACCTGGCAAAATCTAAGGATAGAGAAAAGTGGAATTGA 2373 0.421 MGEESRLLKESTTIDDNMEEEVEGVEERDPENNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRAQVSQYIFLKWSLAFLVGLFTGIIATLINLAVENIAGYKLLTVVSYIQTERYLSGFLYFTGMNFLLTFVAAMLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWGWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFCSTAVVVVVLRAFIELCHEGKCGLFGEGGLIMYDVSNVTVSYHVMDIIPVAIIGIIGGVLGSLYNYLLHKVLRLYNLINQKGKIYKLLLSLAVSLFTSVCQYGLPFLAKCKPCDSSLPESVCPTNGRSGNYKQFNCPNGYYNDLATLLLTTNDDAVRNIFSTNTTHEFQASSILIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPHTNIDKGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNITVGELLDVKPAVVTLQGVEKVENIVNALKDTTHNGFPVMDDGVVPPTGLANGMKELHGVILRAHLIQVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEEVAVTREEMEMFVDLHPLTNTTPFTVLESISVAKAMILFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILQVFPHLAKSKDREKWN 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3038g00004 790 SMART cbs_1 720 773 IPR000644 -
Gabi3038g00004 790 SMART cbs_1 606 665 IPR000644 -
Gabi3038g00004 790 MobiDBLite consensus disorder prediction 1 37 - -
Gabi3038g00004 790 SUPERFAMILY Clc chloride channel 71 586 IPR014743 -
Gabi3038g00004 790 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3038g00004 790 Pfam Voltage gated chloride channel 150 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3038g00004 790 SUPERFAMILY CBS-domain pair 588 771 IPR046342 -
Gabi3038g00004 790 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3038g00004 790 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3038g00004 790 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3038g00004 790 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3038g00004 790 PRINTS Plant CLC chloride channel signature 435 451 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3038g00004 790 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 775 - -
Gabi3038g00004 790 Gene3D Clc chloride channel 85 586 - -
Gabi3038g00004 790 Pfam CBS domain 719 771 IPR000644 -
Gabi3038g00004 790 PRINTS Chloride channel signature 483 503 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3038g00004 790 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3038g00004 790 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3038g00004 790 PRINTS Chloride channel signature 533 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3038g00004 790 PRINTS Chloride channel signature 571 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3038g00004 790 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3038g00004 790 PRINTS Chloride channel signature 515 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3038g00004 790 CDD CBS_pair_voltage-gated_CLC_euk_bac 604 771 - -
Gabi3038g00004 790 ProSiteProfiles CBS domain profile. 717 783 IPR000644 -
Gabi3038g00004 790 Gene3D - 589 776 IPR046342 -
Gabi3038g00004 790 FunFam Chloride channel ClC3 85 403 - -
Gabi3038g00004 790 CDD ClC_6_like 62 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3038g00004 Gabi-Chr3038 21548 26022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3038g00004 26 784 Ion Channels AT3G27170 79.974 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3038g00004 K05016 - gmx:778094 1372.07