Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3035g00003 ATGCTCATTCGAGCGAGCAGTACTGCTGGAAAGGTCATACGCTGCAAAGCTGCGGTGGCATGGGAAGCAGGAAAGCCGCTGGTGATGGAGGAAGTGGAGGTAGCTCCACCACAGGCAAATGAGGTTCGTATCAAGATATTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCTAAGGGACAAACACCCTTATTTCCACGCATATTTGGTCATGAAGCAGGCGGAATTGTGGAAAGTGTTGGTGAGGGTGTGATGGATGTGAAGGCTGGGGATCATGTGCTTCCAGTGTTCACAGGGGAATGCAAAGAGTGTGAGCATTGCAAATCAGAGGAAAGTAACATGTGTGACCTCTTAAGGATTAATACTGACCGTGGAGTGATGCTCAATGATGGCCACTCAAGGTTTTCAATTAATGGAAAACCAATATACCATTTTGTTGGAACCTCCACTTTCAGTGAATACACCGTTGTTCATGTTGGCTGTGTTGCCAAGATCAACCCCGCTGCCCCACTTGACAAAGTTTGTATTCTCAGCTGTGGAATCTCAACAGGTCTTGGTGCTACCTTGAATGTTGCAAAACCAAGCAAAGGTTCATCAGTTGCTATATTTGGATTGGGAGCTGTGGGACTCGCTGCTGCTGAGGGAGCTAGACTTGCTGGTGCTTCCAGGATTATTGGGGTTGACTTGAATTCTAAGAGATTTATTGAATCTAAGAAGTTTGGAGTTACTGAGTTTGTGAATCCAAAGGATTATGACAAGCCCGTTCAAGAGGTGATTGTTGCGTTGACTGGCGGGGGAGTTGACCGAAGTGTTGAGTGTACTGGAAGTATCAGTGCTATGATCTCTGCATTCGAATGCGTGCATGATGGATGGGGTGTTGCTGTACTTGTTGGTGTGCCAAATAAAGATGATGCTTTCAAAACCCATCCAATTAATGTATTGAACGAAAAGACTCTAAAGGGTACTTTCTTTGGTAACTATAAACCACGGTCTGACCTCCCATCAGTGGTGGAGATGTACATGAACAAGGAACTTGAACTGGAGAAATTCATAACCCATGAAGTGCCTTTCTCAGAAATCAACAAAGCCTTCGAATACATGCTTAAAGGGGAGAGCCTGCGTTGTATAATCCGCATGAGTGCATAG 1155 0.4545 MLIRASSTAGKVIRCKAAVAWEAGKPLVMEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVMDVKAGDHVLPVFTGECKECEHCKSEESNMCDLLRINTDRGVMLNDGHSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCILSCGISTGLGATLNVAKPSKGSSVAIFGLGAVGLAAAEGARLAGASRIIGVDLNSKRFIESKKFGVTEFVNPKDYDKPVQEVIVALTGGGVDRSVECTGSISAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPINVLNEKTLKGTFFGNYKPRSDLPSVVEMYMNKELELEKFITHEVPFSEINKAFEYMLKGESLRCIIRMSA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3035g00003 384 CDD alcohol_DH_plants 13 381 - -
Gabi3035g00003 384 Gene3D - 23 374 - -
Gabi3035g00003 384 Pfam Zinc-binding dehydrogenase 210 340 IPR013149 -
Gabi3035g00003 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 346 IPR036291 -
Gabi3035g00003 384 FunFam Alcohol dehydrogenase class-P 187 325 - -
Gabi3035g00003 384 SUPERFAMILY GroES-like 332 381 IPR011032 -
Gabi3035g00003 384 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Gabi3035g00003 384 FunFam alcohol dehydrogenase 1-like isoform X1 23 186 - -
Gabi3035g00003 384 Gene3D - 187 325 - -
Gabi3035g00003 384 SUPERFAMILY GroES-like 8 190 IPR011032 -
Gabi3035g00003 384 PANTHER ALCOHOL DEHYDROGENASE 10 380 - -
Gabi3035g00003 384 Pfam Alcohol dehydrogenase GroES-like domain 40 165 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3035g00003 Gabi-Chr3035 29810 34441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3035g00003 19 374 Monolignol Biosynthesis Gene Families AT1G72680 25.549 5.18e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3035g00003 K18857 - gmx:100783318 708.368