Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3033g00025 ATGGGTTTCTCCCAAGGAACCTGCACTGATTCGAGGGACCTTTCCAATGCCCCAAACGCTTCTCTATCTGCTTCCTCTTCTGAAGTTGCAGATCACTCCTGTGACTACAACAAGCTCAAATTTAGAACCTTTTTGAGAAAAATGATCTGGGAATTTGGTTTTGCATGTGTTGCCGACCCTTCCCGTCGCCGGAGGAGCTCCGAGAGAAACCTGGGTAATGGCCAAAACGACGGCAACGTCAACAAGAAGACAAATTTGGAGCACAACAAGGCTTGGTTGCTTGCAGAATCTGGTGGGTGTGGAGCAGAATTGACCAATGCTGACCCTCAATCGGTTCACTCTTCTTTCAGGTTCAGTTTTTGTTCTCAGGTTGAGTTGGAGTCCTTGAACATGAATTCTTCCACTGCTGCAACCGTTTTGATGGTGAATTTGGACAATGGGGTGAGTGATTCTCGCTCCAGGGAACTGAAATGGAGGAGAATGGAGTCATTGGAAAAGACCATATCCCCTGTTGCTCACTCTTTGACCAGGTTCAGCTATGGTGAAATTCTTTCTGCTACTCGGAATTTCTCCAAAGGTAGAGTGTTGGGGAGAGGGGCATTGAGCTGTGTTTTTAGGGGAAGAGTTGGAGTTTTGAGGACTGCTGTAGCAATTAAACAGTTGGACAAGGAAGACAAGGAATCTGCCAAGGCCTTTTGTAGAGAATTGATGATTGCAAGTTCTCTTCATAGCCCAAATGTTGTTCCCCTTGTGGGCTTTTGTATTGACTCGGAGGAAGGTTTGTTTTTGGTGTACAAGTATGTCTCAGGAGGCAGCTTGGAGCGCCACTTGCATGGGAGGAAGAAGGATGTGAAGGGTAGTTCACCACTTCCATGGTCTGTGAGGTACAAAGTTGCAATTGGGATTGCAGAAGCTTTGGCTTATCTGCATAGTGGAACTGAAAGATGTGTTGTTCACAGAGACATTAAGCCCTCAAACATTCTGCTTTCTTCTAAGAAGACTCCCAAACTATGTGATTTCGGATTAGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCTCCTGAGTATTTCCAACACGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTTGGTGTGGTTTTATTGGAACTCATTACTGGCCGTAAGCCAATCGAAGCAAGAAGGCTTCCAGGAGAGGAGAACTTGGTCTTATGGGCTAAACCTTTTCTACAGAAAGGGAAAGGAGCCATTGAAGAGTTGCTTGATCCTCAACTCAAGTGCAGTTTGAGATTCTCTAATCAAATGGGTCGAATGATTGAAGCAGCAGCTGCTTGTGTTACAAATGAAGAATCTCGAAGACCTGGCATATATGAGATTATTGCAATACTGAAAGGCGAAGAAGAACCGGTTTTCTCTAAAAGAAAGAAATCCAGTTTTCTTGGGAATGGATGCGTGATTGATTGTTATTCTCAGTTACAACAAACCAACAATGAGATGAAAAGTCACTTGGCTTTGGCAATGCTTGGAGTTTCGGAGTTTGAGGATGATGATTATCTCTATGGTCGCTAA 1590 0.4403 MGFSQGTCTDSRDLSNAPNASLSASSSEVADHSCDYNKLKFRTFLRKMIWEFGFACVADPSRRRRSSERNLGNGQNDGNVNKKTNLEHNKAWLLAESGGCGAELTNADPQSVHSSFRFSFCSQVELESLNMNSSTAATVLMVNLDNGVSDSRSRELKWRRMESLEKTISPVAHSLTRFSYGEILSATRNFSKGRVLGRGALSCVFRGRVGVLRTAVAIKQLDKEDKESAKAFCRELMIASSLHSPNVVPLVGFCIDSEEGLFLVYKYVSGGSLERHLHGRKKDVKGSSPLPWSVRYKVAIGIAEALAYLHSGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRLPGEENLVLWAKPFLQKGKGAIEELLDPQLKCSLRFSNQMGRMIEAAAACVTNEESRRPGIYEIIAILKGEEEPVFSKRKKSSFLGNGCVIDCYSQLQQTNNEMKSHLALAMLGVSEFEDDDYLYGR 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3033g00025 529 PANTHER OS08G0249100 PROTEIN 119 485 IPR046958 -
Gabi3033g00025 529 FunFam probable serine/threonine-protein kinase PBL7 151 267 - -
Gabi3033g00025 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Gabi3033g00025 529 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Gabi3033g00025 529 ProSiteProfiles Protein kinase domain profile. 190 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3033g00025 529 SUPERFAMILY Protein kinase-like (PK-like) 175 474 IPR011009 -
Gabi3033g00025 529 Gene3D Transferase(Phosphotransferase) domain 1 268 486 - -
Gabi3033g00025 529 FunFam Putative receptor-like serine/threonine-protein kinase 268 486 - -
Gabi3033g00025 529 SMART serkin_6 190 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3033g00025 529 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3033g00025 529 Pfam Protein kinase domain 191 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3033g00025 Gabi-Chr3033 266192 269390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3033g00025 176 473 Trihelix Transcription Factor Family AT1G70460 43.000 1.38e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi3033g00025 Pkinase 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3033g00025 - - gmx:100786826 919.457