Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3033g00019 ATGGCACTGGCCAAAGACAAAATTCCACATGGTTCAAGCATGGACAGCAAGGTTCAAACTTGTGTTTTCAATAAGAATTCTGTGGAGGTTACCTCCTTAACCACTCATGGGATCAATGAGTATCACAAATCTGTGCTTGAAGAGGAAGATGGCTCACATAGTACTAACTGTCTCAGCAATGATTCAGCTATAACCCATTCTCCTTCTCTACATGGCAGTGGCAATGTATATGTCTATAAAGGCACAAACTATCAGATGGAAGAAGCAGAATCTCTGACTAGTTTCAAAGCCAGTGAGTACAGCAATCTCATGCAAGGTAGTGAATCTTTGCTTAGCTTTGAGCAGAAAAGAATGTACTGTGTTTGGGAGAATAATTTGCAACAAGGCTATAACCAATGGAATCAGATTAGTCCAAGAAGCACAAAAGACTTGCGCCTAGTGCAAGATTTCAATTGCTTTGAAACTGCTAGTGGCTATAGTTCCATAGTCAATAGTGCAAAAGAGAAGCAACATGGCCAAAGTTCATGTGGGTGGCTGTATCCAGAACCAACTATCCCTGTTGATAGCTTCCAGAAGCCAGGAGAACAAGAATCAGCCTTGAAAAAACGCACTTCTATGGGTGAGAGCATGAAAGCTTCTAAGAAGCAATGCTCAAGTGAGAGTAAAACACCAAAACCAAAGTCAAGCACATCCAAGGATCCTCAAAGTGTGGCTGCTAAGAATAGAAGAGAGAGGATAAGTGAGAGGCTCAAGGTACTACAAGAACTTGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGCTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAAGAAGCCATCGATGCCATTCTTTCATGCCAAAGAGACAGAAGTTCAAGCTCAAAGTAG 975 0.4144 MALAKDKIPHGSSMDSKVQTCVFNKNSVEVTSLTTHGINEYHKSVLEEEDGSHSTNCLSNDSAITHSPSLHGSGNVYVYKGTNYQMEEAESLTSFKASEYSNLMQGSESLLSFEQKRMYCVWENNLQQGYNQWNQISPRSTKDLRLVQDFNCFETASGYSSIVNSAKEKQHGQSSCGWLYPEPTIPVDSFQKPGEQESALKKRTSMGESMKASKKQCSSESKTPKPKSSTSKDPQSVAAKNRRERISERLKVLQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEAIDAILSCQRDRSSSSK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3033g00019 324 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 50 288 IPR045843 GO:0003700|GO:0006355
Gabi3033g00019 324 MobiDBLite consensus disorder prediction 210 236 - -
Gabi3033g00019 324 Gene3D - 225 287 IPR036638 GO:0046983
Gabi3033g00019 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 289 IPR036638 GO:0046983
Gabi3033g00019 324 MobiDBLite consensus disorder prediction 187 243 - -
Gabi3033g00019 324 FunFam Transcription factor bHLH83 228 287 - -
Gabi3033g00019 324 SMART finulus 236 285 IPR011598 GO:0046983
Gabi3033g00019 324 CDD bHLH_AtIND_like 231 293 - -
Gabi3033g00019 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Gabi3033g00019 324 Pfam Helix-loop-helix DNA-binding domain 240 280 IPR011598 GO:0046983
Gabi3033g00019 324 MobiDBLite consensus disorder prediction 195 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3033g00019 Gabi-Chr3033 195220 196846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3033g00019 71 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.308 4.16e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3033g00019 HLH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3033g00019 - - gmx:100810010 467.233