Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3033g00018 ATGGAGAGTCCTCATTCTCCTTCTTCTTCGTCTTCTTCTTCTGAAGGGCATAGCGCCGACGCCATTAATTTCGAAGCCGAGGAGCCACGAACGCCGTTAGCCGTGCGCCGAGCCATGCAGTTACTCAACTCCGGCGAGCCCGAGCTGCGCCTCCAAGCCGCTCGTGATATCCGGCGGCTCACCAAAACCTCCCACCGCTGTCGCCGACAGCTTTCTGAAGCTGTCGGTCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCTGCTCTCCTCGCCTTGCTTAACCTAGCCGTCAAAGATGAAAAGAATAAAATCAATATAGTGGAGGCTGGTGCATTAGAACCGATAATTAGTTTCCTCAAGTCACAAAATATAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCTTCTTCAACCAACAAACCAATTATCAGTGCTTGTGGCGCCATTCCTCTTCTTGTGGATATCCTTAGAGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACACACCCCAATAATCTCAGCATCATTCTCGAGACAAATCTAATCCCTTTTATAGTTGGCCTTCTTAAAACCTGTAAAAAATCCTCTAAAACAGCTGAAAAATGCTGTGCTTTGATAGAATCGTTGGTGGATTATGATGAGGGCAGAACTGTCTTGACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAATTCTTGAAAATGGGACTCCCCAAAGTAGGGAGCATGCTGTTGGAGCACTATTGACAATGTGCCAAAGTGATAGATGTAAATACAGGGAACCAATTCTAAAAGAAGGTGTCATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACAGCCAAGTCTCAGTCAAAAGCACGCACCCTCTTGCAGTTACTAAGAGAATCACCATACCCAAGATCTGAAATTCAACCTGACACACTTGAGAATATAGTATGCAACATCATATCCAAGATTGATGGTGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAACAAAGGGCACTCGTATGCACCCCAACTGATCTTCCTATAGCTGGCTGTGCTTCTCAAGTTTCTTCAAAATGA 1170 0.459 MESPHSPSSSSSSSEGHSADAINFEAEEPRTPLAVRRAMQLLNSGEPELRLQAARDIRRLTKTSHRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNINLQESATASLLTLSASSTNKPIISACGAIPLLVDILRDGSPQAKADAVMALSNLSTHPNNLSIILETNLIPFIVGLLKTCKKSSKTAEKCCALIESLVDYDEGRTVLTSEEGGVLAVVEILENGTPQSREHAVGALLTMCQSDRCKYREPILKEGVIPGLLELTVQGTAKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISKIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTDLPIAGCASQVSSK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3033g00018 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Gabi3033g00018 389 Pfam Armadillo/beta-catenin-like repeat 148 184 IPR000225 GO:0005515
Gabi3033g00018 389 Pfam Armadillo/beta-catenin-like repeat 105 142 IPR000225 GO:0005515
Gabi3033g00018 389 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3033g00018 389 FunFam U-box domain-containing protein 4 18 371 - -
Gabi3033g00018 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 157 IPR000225 GO:0005515
Gabi3033g00018 389 SMART arm_5 104 144 IPR000225 GO:0005515
Gabi3033g00018 389 SMART arm_5 61 102 IPR000225 GO:0005515
Gabi3033g00018 389 SMART arm_5 186 228 IPR000225 GO:0005515
Gabi3033g00018 389 SMART arm_5 145 185 IPR000225 GO:0005515
Gabi3033g00018 389 SMART arm_5 230 270 IPR000225 GO:0005515
Gabi3033g00018 389 Gene3D - 9 372 IPR011989 -
Gabi3033g00018 389 PANTHER U BOX DOMAIN-CONTAINING 25 317 - -
Gabi3033g00018 389 MobiDBLite consensus disorder prediction 1 19 - -
Gabi3033g00018 389 SUPERFAMILY ARM repeat 38 334 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3033g00018 Gabi-Chr3033 158678 162286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3033g00018 35 312 U-box Gene Family AT2G23140 32.857 4.06e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3033g00018 - - gmx:100809684 655.21