Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3033g00008 ATGAGAAAACCTTGTTGTGACAAAGAAGACACTAACAAAGGTGCTTGGACCAAGCAAGAAGACCAAAAGCTTATTGATTACATCCGAACTCATGGCGAAGGAAGTTGGCGTTCCCTTCCCAAGGCTGCAGGGTTGCATCGTTGTGGCAAAAGCTGTAGGTTGAGATGGATAAATTATCTACGACCAGACATTAAACGTGGCAATTTTGGCCAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGCAATCGGTGGTCACTCATAGCTGGAAGATTGCCAGGACGAACAGATAACGAAGTGAAGAACTATTGGAATTCTCACATACGCAGAAAGTTAATAAAGATGGGAATTGATCCAAATAATCATAAGCTACACCGAAGCTTCCCTGTTCGACATGCTCACAATGTTTCTGCTACCAGTGCACCATCATCTGGGTCATTGAACAATAGAGTCCCTTTAATCAAATCCAATGGTTCAGATACAATGAGTTTTTGTCATGTAGAAACAGCAGTGGTTAATTCTTCTTCTTCATCCCACTTAAATCTTGACCTAACCATTGCTTTCCCTTCGCCTAAACTTGTTCCAGCTGTGGAAGACAAACCTAAACCTATTTCTGAGTTCTCTAACACAAGAAAAATCGATGATGATTCCGCTCCTACCCTTCTTCTGTTTCGATAA 687 0.4192 MRKPCCDKEDTNKGAWTKQEDQKLIDYIRTHGEGSWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFGQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHRSFPVRHAHNVSATSAPSSGSLNNRVPLIKSNGSDTMSFCHVETAVVNSSSSSHLNLDLTIAFPSPKLVPAVEDKPKPISEFSNTRKIDDDSAPTLLLFR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3033g00008 228 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gabi3033g00008 228 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gabi3033g00008 228 Gene3D - 13 65 - -
Gabi3033g00008 228 CDD SANT 68 111 IPR001005 -
Gabi3033g00008 228 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Gabi3033g00008 228 CDD SANT 15 60 IPR001005 -
Gabi3033g00008 228 SMART sant 65 113 IPR001005 -
Gabi3033g00008 228 SMART sant 12 62 IPR001005 -
Gabi3033g00008 228 FunFam MYB-related transcription factor 12 65 - -
Gabi3033g00008 228 Gene3D - 68 135 - -
Gabi3033g00008 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Gabi3033g00008 228 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gabi3033g00008 228 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Gabi3033g00008 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 143 - -
Gabi3033g00008 228 FunFam Transcription repressor MYB4 68 134 - -
Gabi3033g00008 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3033g00008 Gabi-Chr3033 98277 99926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3033g00008 2 192 MYB Transcription Factor Family AT4G38620 55.610 8.94e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3033g00008 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3033g00008 K09422 - gmx:100793444 298.516