Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3033g00005 ATGGGTTGCTGCTTTGGTGTACAGATTAAAGCTGAGAGCCCTCCACGCTGTGGTTTGAATTCAAAGAATGGTAGCAGAGAAGAGGAAGGTTTGAGTGGTTCAAGCGGCAAGGTCTCCACTTCACCTGTGCTTCAGACTCCTCGGAGTGAGGGTGAGATATTACAGTCCAACAATTTGAAGAACTTCACATTCAATGAGCTAAGAACTGCTACAAGAAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGTGGATTTGGTTGTGTATTTAAAGGGTGGCTTGATGAGCAGACACTTGCTCCTACTAAACCAGGGACAGGAATTGTCATTGCTGTGAAGAGGCTTAACCAAGAGGGTTCCCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGTATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGATCACCGGATTTTGGTATATGAATTTTTGACCAAGGGCAGCTTGGATAATCATTTGTTTAGGAGGGCTTCTTACTTTCAACCACTCTCTTGGAAAATCCGTATGAAGGTTGCTCTTGAAGCTGCCAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGAAGTAATATACCGAGACTTCAAAACTTCTAATATCTTGCTTGATTCTAACTATCATGCAAAACTCTCTGATTTTGGATTGGCAAAAGATGGACCAGCAGGTGATAAAAGCCATGTCTCAACAAGGGTAATGGGAACCCTTGGCTATGCAGCTCCTGAGTATATAGCCACAGGTCATCTAACCAAGAAGAGTGATGTATATAGTTTTGGGGTTGTTCTTCTGGAAATTATGTCAGGCAAACGTGCATTGGATAAAAATAGGCCATCTGGGGAGCATAATTTAGTTGAATGGGCAAAACCATTACTCAGCAGCAAACGCAAGATCTCTCAAGTTATGGATGCACGTATAGAAGGCCAATACTTATTACGTGAAGCAATGAAAGTAGCTCTACTTGCAATTCAATGCCTCTCTGTAGAACCAAAATTTAGACCAAACATAGATGAGGTTGTGAGAATATTGGAGCAACTTCAGGATTCTAAAGACACAGATGGAGTGGGAAGCTCAAACAGCAATGGTTCAAAACCACATAGAAAAAGTATCAACGAGTCTTTGAATGGAGAAGGAACTTCTAATAATCCAAGTTCATCTGCTTCTCCTCTTCGTACTTAG 1218 0.4212 MGCCFGVQIKAESPPRCGLNSKNGSREEEGLSGSSGKVSTSPVLQTPRSEGEILQSNNLKNFTFNELRTATRNFRPDSVVGEGGFGCVFKGWLDEQTLAPTKPGTGIVIAVKRLNQEGSQGHSEWLTEINYLGQLYHPNLVKLIGYCLEDDHRILVYEFLTKGSLDNHLFRRASYFQPLSWKIRMKVALEAAKGLAFLHSDEVEVIYRDFKTSNILLDSNYHAKLSDFGLAKDGPAGDKSHVSTRVMGTLGYAAPEYIATGHLTKKSDVYSFGVVLLEIMSGKRALDKNRPSGEHNLVEWAKPLLSSKRKISQVMDARIEGQYLLREAMKVALLAIQCLSVEPKFRPNIDEVVRILEQLQDSKDTDGVGSSNSNGSKPHRKSINESLNGEGTSNNPSSSASPLRT 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3033g00005 405 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3033g00005 405 SUPERFAMILY Protein kinase-like (PK-like) 49 356 IPR011009 -
Gabi3033g00005 405 MobiDBLite consensus disorder prediction 362 405 - -
Gabi3033g00005 405 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Gabi3033g00005 405 MobiDBLite consensus disorder prediction 363 405 - -
Gabi3033g00005 405 MobiDBLite consensus disorder prediction 25 49 - -
Gabi3033g00005 405 MobiDBLite consensus disorder prediction 13 49 - -
Gabi3033g00005 405 CDD STKc_IRAK 80 359 - -
Gabi3033g00005 405 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Gabi3033g00005 405 FunFam Probable serine/threonine-protein kinase PBL8 160 375 - -
Gabi3033g00005 405 Pfam Protein tyrosine and serine/threonine kinase 78 355 IPR001245 GO:0004672|GO:0006468
Gabi3033g00005 405 PANTHER OS01G0588500 PROTEIN-RELATED 40 360 - -
Gabi3033g00005 405 Gene3D Transferase(Phosphotransferase) domain 1 160 377 - -
Gabi3033g00005 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gabi3033g00005 405 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3033g00005 Gabi-Chr3033 56386 59803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3033g00005 56 399 Glycoside Hydrolase AT3G07070 43.014 1.63e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3033g00005 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3033g00005 - - gmx:100800735 630.557