Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3033g00004 ATGGGTTGCTGCTTTGGTGTACAGATTAAAGCTGAGAGCCCTCCACGCTGTTTGAATTCAAAGAATGGTAGCAGAGAAGAGGAAGGTTTGAGTGGTTCAAGCGGCAAGGTCTCCACTTCACCTGTGCTTCAGACTCCTCGGAGTGAGGGTGAGATATTACAGTCCAACAATTTGAAGAACTTCACATTCAATGAGCTAAGAACTGCTACAAGAAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGTGGATTTGGTTGTGTATTTAAAGGGTGGCTTGATGAGCAGACACTTGCTCCTACTAAACCAGGGACAGGAATTGTCATTGCTGTGAAGAGGCTTAACCAAGAGGGTTCCCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGTATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGATCACCGGATTTTGGTATATGAATTTTTGACCAAGGGCAGCTTGGATAATCATTTGTTTAGGAGGGCTTCTTACTTTCAACCACTCTCTTGGAAAATCCGTATGAAGGTTGCTCTTGAAGCTGCCAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGAAGTAATATACCGAGACTTCAAAACTTCTAATATCTTGCTTGATTCTAACTATCATGCAAAACTCTCTGATTTTGGATTGGCAAAAGATGGACCAGCAGGTGATAAAAGCCATGTCTCAACAAGGGTAATGGGAACCCTTGGCTATGCAGCTCCTGAGTATATAGCCACAGGTCATCTAACCAAGAAGAGTGATGTATATAGTTTTGGGGTTGTTCTTCTGGAAATTATGTCAGGCAAACGTGCATTGGATAAAAATAGGCCATCTGGGGAGCATAATTTAGTTGAATGGGCAAAACCATTACTCAGCAGCAAACGCAAGATCTCTCAAGTTATGGATGCACGTATAGAAGGCCAATACTTATTACGTGAAGCAATGAAAGTAGCTCTACTTGCAATTCAATGCCTCTCTGTAGAACCAAAATTTAGACCAAACATAGATGAGGTTGTGAGAATATTGGAGCAACTTCAGGATTCTAAAGACACAGATGGAGTGGGAAGCTCAAACAGCAATGGTTCAAAACCACATAGAAAAAGTATCAACGAGTCTTTGAATGGAGAAGGAACTTCTAATAATCCAAGTTCATCTGCTTCTCCTCTTCGTACTTAG 1215 0.4206 MGCCFGVQIKAESPPRCLNSKNGSREEEGLSGSSGKVSTSPVLQTPRSEGEILQSNNLKNFTFNELRTATRNFRPDSVVGEGGFGCVFKGWLDEQTLAPTKPGTGIVIAVKRLNQEGSQGHSEWLTEINYLGQLYHPNLVKLIGYCLEDDHRILVYEFLTKGSLDNHLFRRASYFQPLSWKIRMKVALEAAKGLAFLHSDEVEVIYRDFKTSNILLDSNYHAKLSDFGLAKDGPAGDKSHVSTRVMGTLGYAAPEYIATGHLTKKSDVYSFGVVLLEIMSGKRALDKNRPSGEHNLVEWAKPLLSSKRKISQVMDARIEGQYLLREAMKVALLAIQCLSVEPKFRPNIDEVVRILEQLQDSKDTDGVGSSNSNGSKPHRKSINESLNGEGTSNNPSSSASPLRT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3033g00004 404 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3033g00004 404 MobiDBLite consensus disorder prediction 361 404 - -
Gabi3033g00004 404 MobiDBLite consensus disorder prediction 16 49 - -
Gabi3033g00004 404 SUPERFAMILY Protein kinase-like (PK-like) 48 355 IPR011009 -
Gabi3033g00004 404 PANTHER OS01G0588500 PROTEIN-RELATED 39 359 - -
Gabi3033g00004 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gabi3033g00004 404 Pfam Protein tyrosine and serine/threonine kinase 77 354 IPR001245 GO:0004672|GO:0006468
Gabi3033g00004 404 Gene3D Transferase(Phosphotransferase) domain 1 159 376 - -
Gabi3033g00004 404 FunFam Serine/threonine-protein kinase BIK1 40 158 - -
Gabi3033g00004 404 CDD STKc_IRAK 79 358 - -
Gabi3033g00004 404 MobiDBLite consensus disorder prediction 362 404 - -
Gabi3033g00004 404 FunFam Probable serine/threonine-protein kinase PBL8 159 374 - -
Gabi3033g00004 404 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Gabi3033g00004 404 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3033g00004 Gabi-Chr3033 56386 59803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3033g00004 55 398 Glycoside Hydrolase AT3G07070 43.014 1.46e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3033g00004 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3033g00004 - - gmx:100800735 623.624