Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi302g00012 ATGCCGGAGATCGAACATGCGGCGATGGAAACCGCCCTGTTCGGGAAGTACGAGCTAGGTCGAGTCCTGGGCTGCGGCGCGTTCGCAAAAGTGTACTACGCGCGGAACGTGCACACGGGGCAGAGCGTGGCGGTGAAGATCATCAACAAGAAGAAGCTCGCTGGAACGGCACTCGCCGGCCACGTGAAGCGCGAGATAAGCATCATGAGCCGCCTCCACCACCCATACATCGTGCGCCTCCACGAGGTCCTCGCAACGAAGACGAAGATCTTCTTCGTCATGGACTTCGTTCGCGGTGGCGAGCTCTTCGAGAAAATCTCAAAGGGTCGCTTCTCCGAGGATCTCAGCCGTCGCTACTTCCACCAATTAGTCTCCGCCATCGGATACTGCCACTCCCGCGGCGTTTTCCACCGTGACCTCAAGCCGGAGAATCTCCTTCTCGACGAGAATGGTGATTTGAAGGTTTCGGATTTTGGGTTAAGTGCTGTTAGGGATCAGATCCGACCCGACGGGTTGCTCCATACCCTTTGCGGCACACCCGCTTACGTGGCACCGGAGATTCTTGCCAAGAAAGGTTATGATGGGGCCAAGGTTGATGTTTGGTCATGCGGCGTCGTTTTGTTTGTTCTCGCTGCCGGGTACCTTCCGTTTAATGACCCGAATTTGATGGGGATGTACAGAAAGATTTACAAAGGGGAATTCCGGTGTCCTCGGTGGATGTCGCCGGAGCTCCGTCGGTTCCTAAAGCGGTTACTTGATACCAACCCGGAAACCCGGATGACCGTTGATGGGATAACCCGGGACCCGTGGTTCAGGAAGGACTACAAGGCGATCAAGTTTCACGAGGAGGATTATGGGTCCGGGTTCGGGTCCGGGTCGAAGGGTGATGGGTTTGAGAGGGTGTTAGATTTGAACGCGTTTGATATCATATCGTTTTCGTCAGGTTTGAATCTTTCCGGGTTGTTTGGGGAGTCTGAAGGCGGAGAGAGGTTGGTGTTGCGGGATTCGCCGGAAATGATTTTGGAGACGGTGGAGGAGGTGGGTGTGGCGGAGGGGATGGCGGTGAGGTGGAAGAAGGAATGTGGGGTGGAGCTGGAAGGGCTGAATGGGAATTTCGGAATTGGGATTGAGGTTCACCGGTTAACGGCGGAGCTCGCGGTGGTTGAGGTTAGGAGTAGGGGCGGCGACGCCGTTGATGTGTGGGACAACAAGCTCAAGCCTCAGCTCCTTGGTGGTGCAACGACGTCGCATCATCTTGAACCTGAACCTGAACCTGAGCCGCAGGTTGCCGGTGACTAA 1299 0.5589 MPEIEHAAMETALFGKYELGRVLGCGAFAKVYYARNVHTGQSVAVKIINKKKLAGTALAGHVKREISIMSRLHHPYIVRLHEVLATKTKIFFVMDFVRGGELFEKISKGRFSEDLSRRYFHQLVSAIGYCHSRGVFHRDLKPENLLLDENGDLKVSDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMGMYRKIYKGEFRCPRWMSPELRRFLKRLLDTNPETRMTVDGITRDPWFRKDYKAIKFHEEDYGSGFGSGSKGDGFERVLDLNAFDIISFSSGLNLSGLFGESEGGERLVLRDSPEMILETVEEVGVAEGMAVRWKKECGVELEGLNGNFGIGIEVHRLTAELAVVEVRSRGGDAVDVWDNKLKPQLLGGATTSHHLEPEPEPEPQVAGD 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi302g00012 432 Gene3D Transferase(Phosphotransferase) domain 1 8 288 - -
Gabi302g00012 432 CDD CIPK_C 305 409 - -
Gabi302g00012 432 FunFam Non-specific serine/threonine protein kinase 7 295 - -
Gabi302g00012 432 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Gabi302g00012 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 393 - -
Gabi302g00012 432 Pfam NAF domain 304 356 IPR004041 GO:0007165
Gabi302g00012 432 SUPERFAMILY Protein kinase-like (PK-like) 14 278 IPR011009 -
Gabi302g00012 432 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Gabi302g00012 432 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Gabi302g00012 432 Gene3D Kinase associated domain 1, KA1 301 411 - -
Gabi302g00012 432 MobiDBLite consensus disorder prediction 411 432 - -
Gabi302g00012 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Gabi302g00012 432 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi302g00012 432 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi302g00012 432 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi302g00012 Gabi-Chr302 131283 133021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi302g00012 1 410 CBL-interacting serine-threonine protein kinases AT2G30360 65.728 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi302g00012 Pkinase 3.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi302g00012 - - gmx:100799169 677.937