Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi302g00007 ATGGAGAGTAAATCAAATGTCTTAATGCAAAGATATGAGTTAGGAAGATTACTAGGCCAGGGAACCTTTGGAAGGGTTTACTATGCTCGTAGTAAAATAACTAACCAGAGTGTAGCTATTAAAGGGATTGACAAAGAAAAGGTTATGAGAACTGGGCAAGTTGATCTAGTCAAGCGCGAAATATCTGTAATGAGACTGGCTAGACATCCCAATATTATACAGCTTTTTGAGGTTATGGCCACCAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTCTTCAACAAGGTGGCCAAAGGAAAACTCAAACAAGATGTTGCACACAAATATTTTAAGCAGCTAATCAATGCAGTGGATTTTTGTCACAGTAGAGGCGTGTACCACAGAGACATAAAGCCCGAGAACATTCTATTGGATGAAAATGGGAATCTAAAGGTCTCTGATTTTGGGTTAAGTGCACTTGCTGAATCCAAGAGGCAGGATGGCTTACTCCATACAGCTTGTGGCACCCCTGCCTATGTTGCTCCTGAAGTCATCCAAAGGAAGGGATATGATGGTGCCAAAGCTGATATTTGGTCTTGTGGAATAGTTCTATTTGTCTTGTTGGCAGGTTATCTCCCTTTTCATGACCCAAATTTGATAGAGATGTATAGGAAGATAAGCAAGGCAGAATTAAAATGCCCTAATTGGTTCCCACCAGAAGTATGCAGTCTATTGGGCAAGATATTGGATCCAAATCCTGACACTAGGATTTCCATAGTTGAGATTAAGGAATACGGTTGGTTTAAGAAAGGGCCAACTGCTAGAAATAAAAAACCTGTAGTGGAAAACAACAGTGTCTCTTCTTCAGGTACAAGTCTCTCTGGTCAAAATGAAGAAAGTGATGGTCTAGCAGCAGAAGCCAAGGAAGATTCAGTTGTGCCCGTAAGTATAAATGCATTTGATATCATCTCCCGTTCTGCTGGTTTTAATCTTTCTAGATTCTTTGAAGATAGTTTTTACAAAAGAGAAGCAAGATTTAGTTCAAGACTACCTGCTTCAGTCATCATCTCAAAGCTGGAAGACATTGCTAAGCAACTGAAGCTGAAAATAAAGAAAAAAGCTGCTGGTTTGTTAAAACTAGAGGGAATCGATGAAGGCAGGAAAGGGATTTTATCCATTGATGCAGAGATATTTGAGGTTACTCCTTCTTTACATTTGGTGGAGGTGAAGAAATCAAATGGTGATACACTGGAATATCAGAAAATATTGAAAGAGGATATAAGGCCTGCTCTTCAGGATATTGTTTGGGTCTGGCAAAGTGACCAACAACTGCAATCACTACAGTCAGAGCAACAGCCACAGATACATGACCAAGAACATCCACAGTCATAA 1386 0.3968 MESKSNVLMQRYELGRLLGQGTFGRVYYARSKITNQSVAIKGIDKEKVMRTGQVDLVKREISVMRLARHPNIIQLFEVMATKSKIYFVMEYAKGGELFNKVAKGKLKQDVAHKYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALAESKRQDGLLHTACGTPAYVAPEVIQRKGYDGAKADIWSCGIVLFVLLAGYLPFHDPNLIEMYRKISKAELKCPNWFPPEVCSLLGKILDPNPDTRISIVEIKEYGWFKKGPTARNKKPVVENNSVSSSGTSLSGQNEESDGLAAEAKEDSVVPVSINAFDIISRSAGFNLSRFFEDSFYKREARFSSRLPASVIISKLEDIAKQLKLKIKKKAAGLLKLEGIDEGRKGILSIDAEIFEVTPSLHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQQLQSLQSEQQPQIHDQEHPQS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi302g00007 461 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 429 - -
Gabi302g00007 461 FunFam Aurora kinase A 4 95 - -
Gabi302g00007 461 MobiDBLite consensus disorder prediction 276 303 - -
Gabi302g00007 461 FunFam Non-specific serine/threonine protein kinase 310 434 - -
Gabi302g00007 461 Pfam NAF domain 312 370 IPR004041 GO:0007165
Gabi302g00007 461 SUPERFAMILY Protein kinase-like (PK-like) 8 293 IPR011009 -
Gabi302g00007 461 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Gabi302g00007 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi302g00007 461 CDD CIPK_C 316 430 - -
Gabi302g00007 461 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi302g00007 461 Gene3D Kinase associated domain 1, KA1 317 435 - -
Gabi302g00007 461 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi302g00007 461 MobiDBLite consensus disorder prediction 276 297 - -
Gabi302g00007 461 FunFam Non-specific serine/threonine protein kinase 92 273 - -
Gabi302g00007 461 Gene3D Transferase(Phosphotransferase) domain 1 3 316 - -
Gabi302g00007 461 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi302g00007 461 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi302g00007 Gabi-Chr302 96554 99322 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi302g00007 1 440 CBL-interacting serine-threonine protein kinases AT5G58380 67.699 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi302g00007 Pkinase 6.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi302g00007 - K07198 gmx:100790905 719.539