Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi302g00003 ATGGAGATATCATTGTTGAAAATGCTTGCTAATGGCATATCCTCATTTTTGCATTTATCATATTCTGGAAACATGAACTCAGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACTTAAGTTGTTGAAACCAATCATTGATGTGATTGTTAATTCTGAGTTAACTACTGATGAAATGCTTAATAAGATATTCAAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGCATGTTGAGAACTGGCACCTATTGTCCAGCAAAGTTTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGCATTCGGACTTCAGCGCTCAATATTTTCCAGCAGCTGAAGGCTTCTCAGCAATGTGTTGGTGATGAATTGAGTTCTGAACATTTAGAGCATTGTGTTCAGAAACTTAAGCATTTGGGACATGAAGAAACCTTATCAGTCATTAAGGAAGCTATTACGGAACAACTGAAAGGTGTAGGACCCAGTGCGGAGGACCTGGCAAAAATTGCTGATAGCCTGGGCCTAAGGACTAATGAGGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACCGAAAAGACTGCAGAAGCTGAATACATTGATCAAGTGATTGCTGTTGTAATGCATATGCATGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGTAGCAGCCCAGTTCCAGTACCTGCTGACTTTTGTTGTCCTCTTTCTTTGGAGTTGATGATTGATCCGGTGATTGTCGCATCAGGGCAAACCTATGAACGGGCTTTTATAAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCCAAGACACGTCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAATTGGTGTGAAGCAACCAATGTGAAGTTGGTTGGTCCCACACAGTCCACAAATTTAAATCAAGCACCTGTCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCACCTGTTTTTTCTCATTCCAGGAGCAACCTGCCATCGTCACCTGAGTCGGTTCGTTCTCGTTCTTTTAGTTCACCGGGTAATAACTTAACTTCTGGTGGAATCCAGCGAGAAGGAACGTCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGCATGGTTAATGGGCAATATATGGATCTTGCAAGAATACCACCTGCAGGTTTAGATGACAGGTCTGCTAGCTCTGATGAAAGCAGTATGGATTCAGCTGGCCAGCCATCAATGTCACCATCCAGAATTGAATCTTCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATGTTAGAGCTGTTTCTGATTCCAGTGCACTTTCTATTGCAAATTTTCCTCAAGAAACACAAGCTGATGAGAACAATGCTCCTGGGCTGTCAACAAGTCCAGGCTACAGTAGAGATGCTTCTGGTGAATTAAATCCAGGGCCAGATGCTGCTGGTGCTGCTGCCATACCATCAATGCATAGAGAACCTGAGTTCCCACCCCGTTTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGCGGCCATCAGAGAGGCTTGTTCCTAGGATAGTAGCTTCTCCTGCTACTGAAACAAGAACTGATCTTTCTGCTATTGAAACCCAGGTTCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAGAGAGGCAACAGTAGAACTCCGCTTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAGCATATTAGTTGACTTACTTCGATCAGCTGATACCAGGATCCAGGAAAATGCTGTTACCGCACTTCTCAACTTATCAATTAATGATAACAACAAAGCTGCAATCGCAAATGCTGGTGCAATTGATCCTCTGATTCATGTGCTTGAGACTGGTAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATAAGCATAGGGAGGTCTGGGGCAATTAAACCACTGGTAGATTTATTAGGAAATGGAACCCCTAGAGGGAAGAAAGATGCTGCTACTGCTTTGTTCAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTGTTAGCTAATCTTGCCACGATTCCAGAAGGAAGAGATGCAATTGCTCATGAAGGAGGGATTCCTGTTCTTGTTGAGGTTGTCGAGTTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGGAACAGATACTTAAGCATGGTGCTCCAACAAGGTGCTGTACCACCATTAGTGGCTTTATCACAGTCAGGTACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGTAATGCTGGGAGGGGCTGA 2520 0.4393 MEISLLKMLANGISSFLHLSYSGNMNSEPVSKYYQKAEEILKLLKPIIDVIVNSELTTDEMLNKIFKELGHAVDELKEHVENWHLLSSKVYFVMQVEPLISSIRTSALNIFQQLKASQQCVGDELSSEHLEHCVQKLKHLGHEETLSVIKEAITEQLKGVGPSAEDLAKIADSLGLRTNEEVLIEAVALERLKENAEQTEKTAEAEYIDQVIAVVMHMHERLVMLKQAQSSSPVPVPADFCCPLSLELMIDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCEATNVKLVGPTQSTNLNQAPVLHGYMESGTTRESPVFSHSRSNLPSSPESVRSRSFSSPGNNLTSGGIQREGTSPLHPRSTSEGSLSGMVNGQYMDLARIPPAGLDDRSASSDESSMDSAGQPSMSPSRIESSSAFSSEQSQTHVRAVSDSSALSIANFPQETQADENNAPGLSTSPGYSRDASGELNPGPDAAGAAAIPSMHREPEFPPRLMEARSRSQAIWRRPSERLVPRIVASPATETRTDLSAIETQVRNLVEGLRSSDLDTQREATVELRFLAKHNMDNRIAIANCGAISILVDLLRSADTRIQENAVTALLNLSINDNNKAAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKISIGRSGAIKPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRDAIAHEGGIPVLVEVVELGSARGKENAAAALLHLCLHRNRYLSMVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi302g00003 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 720 IPR000225 GO:0005515
Gabi302g00003 839 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Gabi302g00003 839 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Gabi302g00003 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 719 760 IPR000225 GO:0005515
Gabi302g00003 839 SUPERFAMILY ARM repeat 556 828 IPR016024 -
Gabi302g00003 839 MobiDBLite consensus disorder prediction 417 452 - -
Gabi302g00003 839 SMART arm_5 667 707 IPR000225 GO:0005515
Gabi302g00003 839 SMART arm_5 748 788 IPR000225 GO:0005515
Gabi302g00003 839 SMART arm_5 585 625 IPR000225 GO:0005515
Gabi302g00003 839 SMART arm_5 626 666 IPR000225 GO:0005515
Gabi302g00003 839 SMART arm_5 790 830 IPR000225 GO:0005515
Gabi302g00003 839 SMART arm_5 708 747 IPR000225 GO:0005515
Gabi302g00003 839 MobiDBLite consensus disorder prediction 332 452 - -
Gabi302g00003 839 MobiDBLite consensus disorder prediction 464 485 - -
Gabi302g00003 839 Pfam U-box domain 236 305 IPR003613 GO:0004842|GO:0016567
Gabi302g00003 839 Coils Coil 179 209 - -
Gabi302g00003 839 MobiDBLite consensus disorder prediction 464 500 - -
Gabi302g00003 839 Pfam Armadillo/beta-catenin-like repeat 626 665 IPR000225 GO:0005515
Gabi302g00003 839 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515
Gabi302g00003 839 Pfam Armadillo/beta-catenin-like repeat 669 706 IPR000225 GO:0005515
Gabi302g00003 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 312 IPR013083 -
Gabi302g00003 839 SUPERFAMILY RING/U-box 226 312 - -
Gabi302g00003 839 CDD RING-Ubox_PUB 237 289 IPR045210 -
Gabi302g00003 839 FunFam RING-type E3 ubiquitin transferase 539 834 - -
Gabi302g00003 839 PANTHER U BOX DOMAIN-CONTAINING 29 828 - -
Gabi302g00003 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Gabi302g00003 839 Gene3D - 536 834 IPR011989 -
Gabi302g00003 839 MobiDBLite consensus disorder prediction 334 392 - -
Gabi302g00003 839 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi302g00003 Gabi-Chr302 19559 34830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi302g00003 196 839 U-box Gene Family AT2G23140 61.329 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi302g00003 - - gmx:100811250 1328.15