Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi302g00002 ATGGAGATATCATTGTTGAAAATGCTTGCTAATGGCATATCCTCATTTTTGCATTTATCATATTCTGGAAACATGAACTCAGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACTTAAGTTGTTGAAACCAATCATTGATGTGATTGTTAATTCTGAGTTAACTACTGATGAAATGCTTAATAAGATATTCAAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGCATGTTGAGAACTGGCACCTATTGTCCAGCAAAGTTTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGCATTCGGACTTCAGCGCTCAATATTTTCCAGCAGCTGAAGGCTTCTCAGCAATGTGTTGGTGATGAATTGAGTTCTGAACATTTAGAGAAACTTAAGCATTTGGGACATGAAGAAACCTTATCAGTCATTAAGGAAGCTATTACGGAACAACTGAAAGGTGTAGGACCCAGTGCGGAGGACCTGGCAAAAATTGCTGATAGCCTGGGCCTAAGGACTAATGAGGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACCGAAAAGACTGCAGAAGCTGAATACATTGATCAAGTGATTGCTGTTGTAATGCATATGCATGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGTAGCAGCCCAGTTCCAGTACCTGCTGACTTTTGTTGTCCTCTTTCTTTGGAGTTGATGATTGATCCGGTGATTGTCGCATCAGGGCAAACCTATGAACGGGCTTTTATAAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCCAAGACACGTCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAATTGGTGTGAAGCAACCAATGTGAAGTTGGTTGGTCCCACACAGTCCACAAATTTAAATCAAGCACCTGTCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCACCTGTTTTTTCTCATTCCAGGAGCAACCTGCCATCGTCACCTGAGTCGGTTCGTTCTCGTTCTTTTAGTTCACCGGGTAATAACTTAACTTCTGGTGGAATCCAGCGAGAAGGAACGTCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGCATGGTTAATGGGCAATATATGGATCTTGCAAGAATACCACCTGCAGGTTTAGATGACAGGTCTGCTAGCTCTGATGAAAGCAGTATGGATTCAGCTGGCCAGCCATCAATGTCACCATCCAGAATTGAATCTTCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATGTTAGAGCTGTTTCTGATTCCAGTGCACTTTCTATTGCAAATTTTCCTCAAGAAACACAAGCTGATGAGAACAATGCTCCTGGGCTGTCAACAAGTCCAGGCTACAGTAGAGATGCTTCTGGTGAATTAAATCCAGGGCCAGATGCTGCTGGTGCTGCTGCCATACCATCAATGCATAGAGAACCTGAGTTCCCACCCCGTTTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGCGGCCATCAGAGAGGCTTGTTCCTAGGATAGTAGCTTCTCCTGCTACTGAAACAAGAACTGATCTTTCTGCTATTGAAACCCAGGTTCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAGAGAGGCAACAGTAGAACTCCGCTTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAGCATATTAGTTGACTTACTTCGATCAGCTGATACCAGGATCCAGGAAAATGCTGTTACCGCACTTCTCAACTTATCAATTAATGATAACAACAAAGCTGCAATCGCAAATGCTGGTGCAATTGATCCTCTGATTCATGTGCTTGAGACTGGTAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATAAGCATAGGGAGGTCTGGGGCAATTAAACCACTGGTAGATTTATTAGGAAATGGAACCCCTAGAGGGAAGAAAGATGCTGCTACTGCTTTGTTCAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTGTTAGCTAATCTTGCCACGATTCCAGAAGGAAGAGATGCAATTGCTCATGAAGGAGGGATTCCTGTTCTTGTTGAGGTTGTCGAGTTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGGAACAGATACTTAAGCATGGTGCTCCAACAAGGTGCTGTACCACCATTAGTGGCTTTATCACAGTCAGGTACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGTAATGCTGGGAGGGGCTGA 2508 0.4394 MEISLLKMLANGISSFLHLSYSGNMNSEPVSKYYQKAEEILKLLKPIIDVIVNSELTTDEMLNKIFKELGHAVDELKEHVENWHLLSSKVYFVMQVEPLISSIRTSALNIFQQLKASQQCVGDELSSEHLEKLKHLGHEETLSVIKEAITEQLKGVGPSAEDLAKIADSLGLRTNEEVLIEAVALERLKENAEQTEKTAEAEYIDQVIAVVMHMHERLVMLKQAQSSSPVPVPADFCCPLSLELMIDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCEATNVKLVGPTQSTNLNQAPVLHGYMESGTTRESPVFSHSRSNLPSSPESVRSRSFSSPGNNLTSGGIQREGTSPLHPRSTSEGSLSGMVNGQYMDLARIPPAGLDDRSASSDESSMDSAGQPSMSPSRIESSSAFSSEQSQTHVRAVSDSSALSIANFPQETQADENNAPGLSTSPGYSRDASGELNPGPDAAGAAAIPSMHREPEFPPRLMEARSRSQAIWRRPSERLVPRIVASPATETRTDLSAIETQVRNLVEGLRSSDLDTQREATVELRFLAKHNMDNRIAIANCGAISILVDLLRSADTRIQENAVTALLNLSINDNNKAAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKISIGRSGAIKPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRDAIAHEGGIPVLVEVVELGSARGKENAAAALLHLCLHRNRYLSMVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi302g00002 835 SMART arm_5 786 826 IPR000225 GO:0005515
Gabi302g00002 835 SMART arm_5 704 743 IPR000225 GO:0005515
Gabi302g00002 835 SMART arm_5 622 662 IPR000225 GO:0005515
Gabi302g00002 835 SMART arm_5 581 621 IPR000225 GO:0005515
Gabi302g00002 835 SMART arm_5 744 784 IPR000225 GO:0005515
Gabi302g00002 835 SMART arm_5 663 703 IPR000225 GO:0005515
Gabi302g00002 835 MobiDBLite consensus disorder prediction 413 448 - -
Gabi302g00002 835 FunFam RING-type E3 ubiquitin transferase 535 830 - -
Gabi302g00002 835 MobiDBLite consensus disorder prediction 328 448 - -
Gabi302g00002 835 Pfam U-box domain 232 301 IPR003613 GO:0004842|GO:0016567
Gabi302g00002 835 SUPERFAMILY ARM repeat 552 824 IPR016024 -
Gabi302g00002 835 MobiDBLite consensus disorder prediction 460 481 - -
Gabi302g00002 835 Coils Coil 175 205 - -
Gabi302g00002 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 715 756 IPR000225 GO:0005515
Gabi302g00002 835 MobiDBLite consensus disorder prediction 460 496 - -
Gabi302g00002 835 SMART Ubox_2 235 298 IPR003613 GO:0004842|GO:0016567
Gabi302g00002 835 SUPERFAMILY RING/U-box 222 308 - -
Gabi302g00002 835 CDD RING-Ubox_PUB 233 285 IPR045210 -
Gabi302g00002 835 Pfam Armadillo/beta-catenin-like repeat 622 661 IPR000225 GO:0005515
Gabi302g00002 835 Pfam Armadillo/beta-catenin-like repeat 583 620 IPR000225 GO:0005515
Gabi302g00002 835 Pfam Armadillo/beta-catenin-like repeat 665 702 IPR000225 GO:0005515
Gabi302g00002 835 ProSiteProfiles U-box domain profile. 231 305 IPR003613 GO:0004842|GO:0016567
Gabi302g00002 835 PANTHER U BOX DOMAIN-CONTAINING 29 824 - -
Gabi302g00002 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 308 IPR013083 -
Gabi302g00002 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 716 IPR000225 GO:0005515
Gabi302g00002 835 Gene3D - 532 830 IPR011989 -
Gabi302g00002 835 MobiDBLite consensus disorder prediction 330 388 - -
Gabi302g00002 835 FunFam RING-type E3 ubiquitin transferase 231 306 - -
Gabi302g00002 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 634 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi302g00002 Gabi-Chr302 19559 34830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi302g00002 192 835 U-box Gene Family AT2G23140 61.329 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi302g00002 - - gmx:100811250 1318.91