Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3029g00001 ATGACTCAAGTTTATGTTTCACACATTTTTTGGCCAGAGGAAAGATATCGGAAAAATGAATTATCAAATTTCACTAATGTGTATGTGAAAAATTTTCCGGAAACATATACGGATGAGTATCTGAAAAAGTTATTTGGCCCTTGTGGTACAATAACTAGTGCAACTATAATGAAGGATGTGAATGGGAAGTCAAGGTGTTTTGGTTTTGTAAATTTCCAAAGTCCAAATTCAGCAGCAGCTGCAGTTGAGATGTTAAATGGAACTACTGTCATGGATAACAAGGTTTTATTTGTGGGGAGAGCTCAAAGAAAAGCAGAAAGAGAGGCTGAGTTGAAAGCCAAAATTAGCGCATATGAAAAATTACAAGGAACTAATTTGTACGTGAAATTTCTTGATGATGACGTAGATGATGAAAAGTTGAGAGAAGTATTTTCTGAGTTTGGAACTATAACATCCTGTAAGGTGATGCTGGATGCACATGGGCATAGCAAGGGATGTGGTTTTGTGGCATTTTCTACTCTGGAGGAAGCAAGTAAAGCCTTAAAAGAAATGAGTCACAAGTTTATTGGACAAAAGCCTTTGTATGTTGCTATTGCCCAGCGAAAAGAAGAGAGGAAGGCTTATTTGCCGGGTCATTTTGCTGAAATGCGTGCAAAAAATCTTGCCTGGAAGGAAGCTTGGTGTCGCTCTAGAGAGTCCAATCAACTTATCAAGATAGATAACATGAGTTGGCTTCAGAGAATAAATGTTATCCAAGAACCTGCAAAGCTCCCAAAATTCATTCATGATCAGGAGAAGCAAAATATGATGTTAAATATTATTGCACCTCACATACTTCTCGACAAGGTGGAGAAGATGAGAGTTAATGTGCTTAAGATAATCGACCACTCACTACCTATATTGGCTTACCTCCGTAAAGCATACGTTTCTCCTATCAGTTGTGATGCATTTCATGTAGGTTGTATCCCTGGTACTCTTTTTCCTTTCTGA 990 0.3788 MTQVYVSHIFWPEERYRKNELSNFTNVYVKNFPETYTDEYLKKLFGPCGTITSATIMKDVNGKSRCFGFVNFQSPNSAAAAVEMLNGTTVMDNKVLFVGRAQRKAEREAELKAKISAYEKLQGTNLYVKFLDDDVDDEKLREVFSEFGTITSCKVMLDAHGHSKGCGFVAFSTLEEASKALKEMSHKFIGQKPLYVAIAQRKEERKAYLPGHFAEMRAKNLAWKEAWCRSRESNQLIKIDNMSWLQRINVIQEPAKLPKFIHDQEKQNMMLNIIAPHILLDKVEKMRVNVLKIIDHSLPILAYLRKAYVSPISCDAFHVGCIPGTLFPF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3029g00001 329 SUPERFAMILY RNA-binding domain, RBD 25 205 IPR035979 GO:0003676
Gabi3029g00001 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
Gabi3029g00001 329 CDD RRM4_I_PABPs 123 201 - -
Gabi3029g00001 329 CDD RRM3_I_PABPs 24 104 - -
Gabi3029g00001 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 95 IPR000504 GO:0003723
Gabi3029g00001 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Gabi3029g00001 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Gabi3029g00001 329 SMART rrm1_1 26 99 IPR000504 GO:0003723
Gabi3029g00001 329 SMART rrm1_1 125 197 IPR000504 GO:0003723
Gabi3029g00001 329 FunFam Poly(A) binding protein cytoplasmic 1 like 116 205 - -
Gabi3029g00001 329 Gene3D - 12 111 IPR012677 -
Gabi3029g00001 329 Gene3D - 112 211 IPR012677 -
Gabi3029g00001 329 PANTHER RNA BINDING PROTEIN 122 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3029g00001 Gabi-Chr3029 22076 23549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3029g00001 25 221 Eukaryotic Initiation Factors Gene Family AT1G71770 29.000 5.44e-21 92.0