Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3027g00038 ATGTCGATTTCCTGCTCCAACTGCTTCTCCGACTCCGACCTCCTCTGCGTAGAGGACACCTCCGGAATCTTGTCCGGAGAGTCGCCGGAATACTCCTCCGACCTCGATTCCTCGTCGCCGTCGGATGATGAGTCTATAGCCGGACTCATCGAAGACGAACACAACTTCGTCCCCGGATTAGACTACCTCTCCAGGTTCCAGTCTCGCTCACTCGACGCCTCCGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTGCAGGCTTATTATGCTTTTCAACCGCTTACGGCTTATCTTTCCGTCAATTACATGGATCGGTTCTTGAATTCTCGGCAGTTGCCGCAGGCAAATGGGTGGCCACTGCAACTTCTATCAGTTGCGTGCTTGTCTTTAGCAGCAAAGATGGAGGAACCTCTTGTTCCGTCTCTGTTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAGCCAAGAACAATTAGAAGGATGGAGCTACTTGTTCTGGGCGTCCTGGATTGGAGGCTAAGATCAGTCACTCCATTTAGCTTTCTCGATTTCTTTGCGTGCAAGTTAGATTCAACTGGAACTTTTACTGGGTTCCTCATTTCACGGGCTACACAAATTATCTTATCCAATATCCAAGAGGCCAACTTTATTGCATATTGGCCATCATGCATTGCTGCCGCGGCCATACTCTTTGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAAGCCTGAGCAAGCCGAATCATGGTGCGAGGGGCTAAGAAAAGAGAAAATTATCGGGTGCTACCAATTATTGCAAGAACTTGTGATTGACAATAACCGGAGGAAACCCCCTAAAGTGTTACCACAGCTTCGAGTGACAACCCTCACCCAAATGAGGTCAAGTGTCTCCTCATTCTCATCCTCCTCCTCCTCTTCTCCTTCGTCCTCATTGCCTTATAAAAGGAGGAAATTGAATAACTGTTTGTGGGTAGATGATGACAAAGGAAACTCCAAGTGA 1008 0.4782 MSISCSNCFSDSDLLCVEDTSGILSGESPEYSSDLDSSSPSDDESIAGLIEDEHNFVPGLDYLSRFQSRSLDASAREESVAWILKVQAYYAFQPLTAYLSVNYMDRFLNSRQLPQANGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPFSFLDFFACKLDSTGTFTGFLISRATQIILSNIQEANFIAYWPSCIAAAAILFAANEIPNWSLVKPEQAESWCEGLRKEKIIGCYQLLQELVIDNNRRKPPKVLPQLRVTTLTQMRSSVSSFSSSSSSSPSSSLPYKRRKLNNCLWVDDDKGNSK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3027g00038 335 SUPERFAMILY Cyclin-like 160 273 IPR036915 -
Gabi3027g00038 335 SUPERFAMILY Cyclin-like 34 175 IPR036915 -
Gabi3027g00038 335 FunFam D2/4-type cyclin 59 176 - -
Gabi3027g00038 335 Pfam Cyclin, N-terminal domain 48 175 IPR006671 -
Gabi3027g00038 335 Gene3D - 59 176 - -
Gabi3027g00038 335 Gene3D - 49 239 - -
Gabi3027g00038 335 SMART cyclin_7 81 169 IPR013763 -
Gabi3027g00038 335 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Gabi3027g00038 335 Pfam Cyclin, C-terminal domain 178 288 IPR004367 -
Gabi3027g00038 335 PANTHER CYCLINS 48 275 IPR039361 -
Gabi3027g00038 335 SMART Cyclin_C_2 178 311 IPR004367 -
Gabi3027g00038 335 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Gabi3027g00038 335 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3027g00038 Gabi-Chr3027 387447 391255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3027g00038 1 334 Core Cell Cycle Gene Families AT1G70210 63.501 2.52e-139 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3027g00038 K18810 - gmx:100775224 536.569