Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3027g00035 ATGGCGAAGCATACGGAAGCGGCGAAGATTCTATGGGGGGAGATGGAGGAGGACGACGGCGAGGATCTGGACTTTCTTCTTCCGGATAAACAGGTAATAGGGCCAGATCAGAACGGCATAAAGAAAGTGATAGAGTACAGGTTCAACGAAGACGGCAACAAGGTCAAGATAACCACCACCACTCGCATCCGCAAGCTCGCCAACGCACGCCTCAGCAAACGCGCCGTCGAGCGCCGCTCCTGGCCCAAGTTCGGCGACGCCGTTCAAGAGGATGTCGGTAGTAGGCTCACCATGGTCTCCACCGAAGAGATCGTCCTCGAGCGTCCCAAGCCTCTTGGTGCAAAAACTGAGGAACCGACGGTGGCTGGAGATCCATTAGCTCAATTTCAGAAAGGTGCTGTTCTTATGGTCTGTAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCATACAAGGATCTTGCCGCACCATCCGAGGGATTTGTTGATAAGCCTCCTGCGTCTGATGCTGCCACTGCTGCTCCGGGTTCAACTAAGGGCGCATATGTGCCTCCCGGATTGAGGGCCGGTGCTGAGAGGACTACTGGATCAGACATGCGGCGTAGGAATGATGAGAATTCTGTGCGGGTCACTAACCTCTCAGAGGACACGAGGGAGCCTGATTTGCATGAACTGTTTCGCCCTTTTGGTGCTGTGAGCAGAGTCTATGTTGCTATTGATCAAAAAACTGGTATGAGCAGAGGTTTTGGCTTTGTTAACTTCGTTAACAGGGAAGATGCTCAAAGAGCTATTAGCAAACTCAATGGATATGGCTACGACAATCTCATCCTTCGAGTTGAATGGGCCACCCCAAGGACAAACTAG 873 0.5223 MAKHTEAAKILWGEMEEDDGEDLDFLLPDKQVIGPDQNGIKKVIEYRFNEDGNKVKITTTTRIRKLANARLSKRAVERRSWPKFGDAVQEDVGSRLTMVSTEEIVLERPKPLGAKTEEPTVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAAPSEGFVDKPPASDAATAAPGSTKGAYVPPGLRAGAERTTGSDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAISKLNGYGYDNLILRVEWATPRTN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3027g00035 290 PIRSF Transl_init_eIF-3_RNA-bind 1 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Gabi3027g00035 290 SUPERFAMILY RNA-binding domain, RBD 207 289 IPR035979 GO:0003676
Gabi3027g00035 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 22 286 - -
Gabi3027g00035 290 CDD RRM_eIF3G_like 210 285 IPR034240 -
Gabi3027g00035 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 277 IPR000504 GO:0003723
Gabi3027g00035 290 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Gabi3027g00035 290 FunFam Eukaryotic translation initiation factor 3 subunit G 173 290 - -
Gabi3027g00035 290 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Gabi3027g00035 290 CDD eIF3G 38 156 IPR024675 -
Gabi3027g00035 290 MobiDBLite consensus disorder prediction 163 208 - -
Gabi3027g00035 290 SMART rrm1_1 210 283 IPR000504 GO:0003723
Gabi3027g00035 290 Gene3D - 171 290 IPR012677 -
Gabi3027g00035 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3027g00035 Gabi-Chr3027 335755 337366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3027g00035 6 288 Eukaryotic Initiation Factors Gene Family AT3G11400 68.153 6.27e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3027g00035 K03248 - gmx:100776807 516.153