Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3027g00020 ATGCCATTTGGTTTGGTCTCGGCCTGGAACAAGCGCCGCAGAAGCAAGTCTCAAGATCATACAGACCCCTGGATTTACAAACCTGCACAGCTTTGGCAACTTGAAGATCAAACACCACGACCAACAAAAAGGCTGCATGGATCATTTGTTTTCACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAAAATTTGCTCGGAAAAGGAGGATTTGGCAAAGTCTACCGGGGCACTTTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGCGCTGCCAGCAATTAAAGAAGCAGAGGGGGAACGTGAGTTCCGTGTAGAAGTTGACATTTTGAGCAGACTGGACCACCCAAATCTCGTTTCTTTGACAGGCTACTGTGCTGATGGAAAGCATAGGTTCCTAGTATACGAATATATGCATAATGGGAACCTACAAGATCATTTGAATGGAATTGGGGAAAGAAATATGGATTGGCCTCTAAGACTCCAAGTGGCACTGGGAGCTGCAAAAGGGCTAGCTTATCTCCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGAGATTTCAAATCGACCAATATTCTCTTAAATTCAAACTTTGAAGCAAAGATATCTGATTTTGGGCTTGCCAAGTTAATGCCAGAAGGACAGGAGACACATGTGACTGCCAGAGTGCTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATCGACTGGGAAACTCACTCTACAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAGCTTTTGACCGGACGTCGAGCAGTAGATCTAAACCAGGGTCCTAGTGATCAGAACCTTGTACTACAGGTGAGGCACATACTAAATGACCGCAAAAAGCTCCGTAAGGTGATAGATCCAGAGATGCCTCGAAATTCTTACACCATTCAGTCTGTAGTCATGGTTGCCAATCTGGCATCAAGATGTGTCCGCACTGAGAGTAACGAGAGACCTTCGATGGCAGAATGTGTAAAAGAACTCCTAATGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCATAGTTTGAGAATGATCTAG 1086 0.4355 MPFGLVSAWNKRRRSKSQDHTDPWIYKPAQLWQLEDQTPRPTKRLHGSFVFTLKEMEEATCSFSDENLLGKGGFGKVYRGTLRSGEVVAIKKMALPAIKEAEGEREFRVEVDILSRLDHPNLVSLTGYCADGKHRFLVYEYMHNGNLQDHLNGIGERNMDWPLRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLNSNFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPSDQNLVLQVRHILNDRKKLRKVIDPEMPRNSYTIQSVVMVANLASRCVRTESNERPSMAECVKELLMIIYTNSKGLGMVMHSLRMI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3027g00020 361 CDD STKc_IRAK 69 340 - -
Gabi3027g00020 361 FunFam receptor-like serine/threonine-protein kinase NCRK 142 352 - -
Gabi3027g00020 361 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Gabi3027g00020 361 SUPERFAMILY Protein kinase-like (PK-like) 39 346 IPR011009 -
Gabi3027g00020 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Gabi3027g00020 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Gabi3027g00020 361 PIRSF ILK 33 351 - -
Gabi3027g00020 361 PANTHER OS01G0750732 PROTEIN 39 343 - -
Gabi3027g00020 361 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3027g00020 361 Pfam Protein kinase domain 64 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3027g00020 361 Gene3D Transferase(Phosphotransferase) domain 1 142 351 - -
Gabi3027g00020 361 ProSiteProfiles Protein kinase domain profile. 63 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3027g00020 361 FunFam serine/threonine-protein kinase PBS1-like 31 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3027g00020 Gabi-Chr3027 197804 201346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3027g00020 46 344 Receptor kinase-like Gene Family AT3G58690 48.026 3.44e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Gabi3027g00020 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3027g00020 - - gmx:100796654 690.649