Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3027g00019 ATGCCATTTGGTTTGGTCTCGGCCTGGAACAAGCGCCGCAGAAGCAAGTCTCAAGATCATACAGACCCCTGTATTTTCTTCTTCTTTTTCTTCTTCTCAGGCTTTAATCATGTAAGGATTTACAAACCTGCACAGCTTTGGCAACTTGAAGATCAAACACCACGACCAACAAAAAGGCTGCATGGATCATTTGTTTTCACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAAAATTTGCTCGGAAAAGGAGGATTTGGCAAAGTCTACCGGGGCACTTTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGCGCTGCCAGCAATTAAAGAAGCAGAGGGGGAACGTGAGTTCCGTGTAGAAGTTGACATTTTGAGCAGACTGGACCACCCAAATCTCGTTTCTTTGACAGGCTACTGTGCTGATGGAAAGCATAGGTTCCTAGTATACGAATATATGCATAATGGGAACCTACAAGATCATTTGAATGGAATTGGGGAAAGAAATATGGATTGGCCTCTAAGACTCCAAGTGGCACTGGGAGCTGCAAAAGGGCTAGCTTATCTCCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGAGATTTCAAATCGACCAATATTCTCTTAAATTCAAACTTTGAAGCAAAGATATCTGATTTTGGGCTTGCCAAGTTAATGCCAGAAGGACAGGAGACACATGTGACTGCCAGAGTGCTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATCGACTGGGAAACTCACTCTACAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAGCTTTTGACCGGACGTCGAGCAGTAGATCTAAACCAGGGTCCTAGTGATCAGAACCTTGTACTACAGGTGAGGCACATACTAAATGACCGCAAAAAGCTCCGTAAGGTGATAGATCCAGAGATGCCTCGAAATTCTTACACCATTCAGTCTGTAGTCATGGTTGCCAATCTGGCATCAAGATGTGTCCGCACTGAGAGTAACGAGAGACCTTCGATGGCAGAATGTGTAAAAGAACTCCTAATGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCATAGTTTGAGAATGATCTAG 1131 0.4297 MPFGLVSAWNKRRRSKSQDHTDPCIFFFFFFFSGFNHVRIYKPAQLWQLEDQTPRPTKRLHGSFVFTLKEMEEATCSFSDENLLGKGGFGKVYRGTLRSGEVVAIKKMALPAIKEAEGEREFRVEVDILSRLDHPNLVSLTGYCADGKHRFLVYEYMHNGNLQDHLNGIGERNMDWPLRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLNSNFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPSDQNLVLQVRHILNDRKKLRKVIDPEMPRNSYTIQSVVMVANLASRCVRTESNERPSMAECVKELLMIIYTNSKGLGMVMHSLRMI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3027g00019 376 PANTHER OS01G0750732 PROTEIN 60 358 - -
Gabi3027g00019 376 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3027g00019 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Gabi3027g00019 376 FunFam receptor-like serine/threonine-protein kinase NCRK 157 367 - -
Gabi3027g00019 376 FunFam serine/threonine-protein kinase PBS1-like 46 156 - -
Gabi3027g00019 376 Pfam Protein kinase domain 79 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3027g00019 376 CDD STKc_IRAK 84 355 - -
Gabi3027g00019 376 Gene3D Phosphorylase Kinase; domain 1 47 156 - -
Gabi3027g00019 376 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Gabi3027g00019 376 Gene3D Transferase(Phosphotransferase) domain 1 157 366 - -
Gabi3027g00019 376 SUPERFAMILY Protein kinase-like (PK-like) 54 361 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3027g00019 Gabi-Chr3027 197804 201346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3027g00019 61 359 Receptor kinase-like Gene Family AT3G58690 48.026 4.69e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Gabi3027g00019 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3027g00019 - - aprc:113868910 689.878