Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3027g00006 ATGTATTTGATTCACTTTCAAATCCGCCAGAGCAATGGTGCCAGTTCCCCTATTCTTTCTCCATATTCTTCTTCTTCTTCTTCCACCTCATTACCTTATAGTTCTAACTACCAGATACAATCAGCTCCATCCCCAGCTTCTTCATCTGGGAATAGAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTAGCTGTTGTATTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCATCAATTTCTCAGTCCAATAGATACGCAGACATGTCTGAATCCAATGCTTACCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCAGGCCTGGACCAGGCTTTCATAGATGCTCTACCTGTTTTCTTTTACAAAGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAATTCTTGGAACAAGACAAGTTGAGATTGCTACCCATATGTAATCATGCTTTTCACATTGACTGCATAGACACATGGTTGCTGTCTAACTCAACTTGTCCTCTCTGTAGAGGGACTCTTTATACGCCAGGGTTTGCCCTTGAAAACCCAGTTTTTGACTTTGAAGGTCCACGTGAGGAAGATGGGGTTTCAGGAAGTGGTGGGGGTGGGGTTGCTGCTGTTAACAAAACCACAGAAAATCACATAATGAATGGGAAAAGGGTGTTTTCTGTCAGGCTTGGAAAATTTAGAAGCTCAAATAATGGAGATGTGGTGGAAAGAAGTGAAGGAGAGAGCAGTAATGGTAATTTGGATGTAAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTTGCTGATTCAGATTTGCGAGTGGCTTTATGCCCCAATAGAGGTGATGGAGGTACAAGTAGCAGTATGAGACAACTGAAAGGAAGAGCAGCCCCTAATGAGAGTTCTTGCACTGATGGGGATGTTGAGGGCAAAAAAATCAACATTGCAAGAAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTAACAAGTTCATTAGAGACCCACTTCAATAATTCTACTGTCACTGCAACTTTGCCATGGATGAATAAAGCCAGAGGTACATGA 1131 0.4147 MYLIHFQIRQSNGASSPILSPYSSSSSSTSLPYSSNYQIQSAPSPASSSGNRISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSSISQSNRYADMSESNAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPICNHAFHIDCIDTWLLSNSTCPLCRGTLYTPGFALENPVFDFEGPREEDGVSGSGGGGVAAVNKTTENHIMNGKRVFSVRLGKFRSSNNGDVVERSEGESSNGNLDVRRCYSMGSFQYVVADSDLRVALCPNRGDGGTSSSMRQLKGRAAPNESSCTDGDVEGKKINIARKGESFSVSKIWQWSRKDKLTSSLETHFNNSTVTATLPWMNKARGT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3027g00006 376 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Gabi3027g00006 376 FunFam RING-H2 finger protein ATL46 106 191 - -
Gabi3027g00006 376 MobiDBLite consensus disorder prediction 294 319 - -
Gabi3027g00006 376 MobiDBLite consensus disorder prediction 295 312 - -
Gabi3027g00006 376 SUPERFAMILY RING/U-box 123 192 - -
Gabi3027g00006 376 Pfam Ring finger domain 143 186 IPR001841 -
Gabi3027g00006 376 CDD RING-H2_EL5-like 143 186 - -
Gabi3027g00006 376 SMART ring_2 144 185 IPR001841 -
Gabi3027g00006 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 191 IPR013083 -
Gabi3027g00006 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 48 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3027g00006 Gabi-Chr3027 61055 62750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3027g00006 72 349 C3H Transcription Factor Family AT2G18650 39.809 2.41e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3027g00006 - - gmx:100805154 544.273