Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3027g00002 ATGGCATCCAGATCATATGCTACTCTACTAGACTTAGCTGGAGGTTTACTGGATATTCCTCACACCCCAAGAACTATTCCAAGGATTATGACAGTTCCTGGAGTTATTTCTAACCTGGACTTTTGTGGTAGAAATGATGGGGATTCAGATGTCAGCTCTTCTGGCTGTCTGGAGCGGAAAATCATTGTGGCAAACATGTTGCCATTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGTGTTTCAGTTTGGATGAAGATTCAATTTTGCTACAATTAAAAGATGGTTTTTCTTCCGATACCGAGGTGATCTATGTGGGATCTCTCAAGGTTGAAATAGATACCAGTGAGCAGGAAGAAGTTGCTCAGAAATTACTGGAGGAATTCAATTGCATACCTACCTTTCTACCCCATGATCTCCAGAAAAAATTCTATCTTGGCTTCTGCAAGCAGCAGCTTTGGCCTCTCTTTCATTACATGTTACCTATGTGCCCTGATCATGGTGACCGTTTTGACCGCTTACTTTGGAAGGCCTATGTTTCTGCAAACAAAATATTTGCAGATAAGGTTATGGAAATAATCAATCCGGATGATGATTTTGTTTGGGTTCATGACTATCACCTGATGGTTTTGCCAACATTCCTAAGGAAGCGGTATAATCGAGTTAAACTAGGATTCTTTCTTCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTTTGCCGGTAAGGGAAGAAATTCTGAGGGGATTGTTGAATTCTGATTTAATTGGACTTGATTACTTTGGCCGGACTATATTTATCAAAATTTTGCCTGTAGGCATTCACATGGGTCGGCTTGAATCTGTATTAAATCTTCATTCTACATCCACTAAATTGAAAGAGATTCAGGAAGAATTTAAGGGTAAGAAGGTGATTCTCGGTGTTGACGACATGGATATTTTTAAGGGCATCAGTCTGAAGCTTCTAGCTGTTGAGCAGCTGCTGCAGCAGAATCCAGATTTGCGGGGCAAAGTTGTCCTAGTTCAGATTGTGAATCCTGCTAGGGGTTCTGGGAAGGATGTTCAGGAAGCAAAGAAGGAAACATATTTAATTGCCCAGAGGATTAATTATACTTATGGTTCAAACCATTATCGGCCAGTTATTCTCATTGACCGTCCTGTTCCTCGTTTTGAGAAGAGTGCTTATTATGCTGTAGCAGAATGTTGCATTGTCAATGCTGTGAGGGATGGCATGAACTTAGTCCCATACAAATATATTGTCTGTAGACAAGGAACTACACTGCTGGATAAAGCTTTGATTAGAAAAAGTGATTCTCCTCGTACAAGCGTGCTTGTTGTGTCTGAGTTCATTGGTTGTTCTCCTTCTCTAAGTGGAGCAATCAGAGTCAATCCTTGGGACATAGATGCTGTTGCTGATGCTCTGTATACAGCCATTACTATGCCTGATTCAGAGAAGCAATTGAGGCACGAGAAACACTACCGGTATGTCAGTTCTCATGATGTGGCGTATTGGGCACGCAGCTTTATGCAGGATTTAGAGAGAGCATGCAGAGATCATTACACCAAATGGTGCTGGGGAATTGGCTGGGGCCTAGGGTTTAAAGTTGTTTCTCTTTCTCCTGGTTTTAGGAAATTGTCTGTTGACCACATTGTTTCAGCATACAAAAGAACCACTAGAAGAGCTATATTTCTCGATTATGATGGTACTCTTGTATCACAATCTTCGATAAATAAAATCCCCAGTCCTGAAGTCATATCTCTGCTAAATGTTCTGTGCAATGATACTAAAAATACCGTGTTCATTGTGAGTGGGAGGGGAAGAGATTCTTTAAGTGATTGGTTTACTTCATGCAAAATGATCGGACTTGCAGCTGAACATGGATACTTTTTAAGGTGGACTCAAGATTCGGAATGGGAAACCAGCCACTTGTCTGCTGATCTTGATTGGAAAAAGATTGTTGAACCTGTCATGCAGTCGTATACAGAGGCAACTGACGGATCTAGTATTGAAATCAAAGAAAGTGCCTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGTCAAGCTAAAGAATTGTTGAATCACCTGGAAAGCGTGCTTGCCAATGAACCTGCAGTTGTTAAGAGGGGCCAGTATATTGTTGAAGTCAAGCCACAGGGAATAAGCAAGGGCTTGGTAGCTGAAAATATTCTTTCCACTATGGTTAATGGTGGAAATTCACCAGATTTTGTGATGTGCGTTGGGGATGATATTTCTGATGAAGACATGTTTGAGAGCATATTAAGGACGGTCTCATCCCCATCATTGCCGTTAGCTCCAGAGATCTTTGCCTGCACTGTTGGTCAGAAACCTAGCAAGGCCAAGTACTATCTTGATGATCCTGCTGATGTTGTGAAGTTGCTTCAAGGCCTTGGTACTTCATCTCATCCTAAGCCCAGGCATCTAGCCCAATTCCAAGTTTCTTTTGAGAGCACAATTTGA 2493 0.4148 MASRSYATLLDLAGGLLDIPHTPRTIPRIMTVPGVISNLDFCGRNDGDSDVSSSGCLERKIIVANMLPLQAKRDIETAKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKVEIDTSEQEEVAQKLLEEFNCIPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPMCPDHGDRFDRLLWKAYVSANKIFADKVMEIINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVREEILRGLLNSDLIGLDYFGRTIFIKILPVGIHMGRLESVLNLHSTSTKLKEIQEEFKGKKVILGVDDMDIFKGISLKLLAVEQLLQQNPDLRGKVVLVQIVNPARGSGKDVQEAKKETYLIAQRINYTYGSNHYRPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTTLLDKALIRKSDSPRTSVLVVSEFIGCSPSLSGAIRVNPWDIDAVADALYTAITMPDSEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACRDHYTKWCWGIGWGLGFKVVSLSPGFRKLSVDHIVSAYKRTTRRAIFLDYDGTLVSQSSINKIPSPEVISLLNVLCNDTKNTVFIVSGRGRDSLSDWFTSCKMIGLAAEHGYFLRWTQDSEWETSHLSADLDWKKIVEPVMQSYTEATDGSSIEIKESALVWHHQDADPDFGSCQAKELLNHLESVLANEPAVVKRGQYIVEVKPQGISKGLVAENILSTMVNGGNSPDFVMCVGDDISDEDMFESILRTVSSPSLPLAPEIFACTVGQKPSKAKYYLDDPADVVKLLQGLGTSSHPKPRHLAQFQVSFESTI 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3027g00002 830 NCBIfam trehalose-phosphatase 559 807 IPR003337 GO:0003824|GO:0005992
Gabi3027g00002 830 CDD GT20_TPS 59 514 IPR001830 GO:0003824|GO:0005992
Gabi3027g00002 830 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 257 809 IPR001830 GO:0003824|GO:0005992
Gabi3027g00002 830 Gene3D Glycogen Phosphorylase B; 52 265 - -
Gabi3027g00002 830 NCBIfam HAD-IIB family hydrolase 562 764 IPR006379 -
Gabi3027g00002 830 FunFam Trehalose-6-phosphate synthase 8 55 260 - -
Gabi3027g00002 830 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 690 821 - -
Gabi3027g00002 830 Gene3D Glycogen Phosphorylase B; 278 498 - -
Gabi3027g00002 830 FunFam Alpha,alpha-trehalose-phosphate synthase 283 498 - -
Gabi3027g00002 830 Pfam Trehalose-phosphatase 564 798 IPR003337 GO:0003824|GO:0005992
Gabi3027g00002 830 Gene3D - 690 820 IPR023214 -
Gabi3027g00002 830 Gene3D - 560 679 IPR023214 -
Gabi3027g00002 830 Pfam Glycosyltransferase family 20 259 514 IPR001830 GO:0003824|GO:0005992
Gabi3027g00002 830 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 560 677 - -
Gabi3027g00002 830 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 518 - -
Gabi3027g00002 830 SUPERFAMILY HAD-like 561 808 IPR036412 -
Gabi3027g00002 830 FunFam Trehalose-6-phosphate synthase 2 644 723 - -
Gabi3027g00002 830 CDD HAD_TPP 562 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3027g00002 Gabi-Chr3027 10244 15928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3027g00002 1 830 Trehalose Biosynthesis Gene Families AT1G60140 70.035 0.0 1274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3027g00002 K16055 - gmx:100818536 1501.88