Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3020g00044 ATGGAGATTTCATCAACCAGAGGGTTAACTGAACTGGGGATAATAGAGGATCCTAACTTTCTCCATCAGTGGCACTTAAGCTCTATTGACACTTCTAGCTTAACATCTGCTACTTTAGGAGAGACTTTGCAAAAATATTCATTCTCTAATGACCCAAACTTCAACCCCAAAACTTCCATGGAAACTTCACCCACTGGAATTGAAAGACCCGCAAAACAGCTCAAAAACAACAGCTGGAATCACAACAAAAGTCCTCAGACATCAGAGACGCAATTTGATTCTTGTTCAAATCTTCTTTCATTTGTTGATTTGAATTACACAAGTCAACTGGGACTAGTGAAGCCTAAGGTGGAGATGGTGTGTCCTAAAATGGATTACACTACTCCTGCAGACATGTTGATCTCTCAAGGAACCTTGGAGAATCAAAACTATGTCTTCAAAACTTGCCACGAGGCCAAAAAGACTGGGACACGTCCTAAACTTTCTCAACACCATGACCACATAATAGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCTCTTGTTCCGGGCCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCTATCAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAAGAGGAAGAAAACTGTGGAATCTGTGGTAATTGTGAAGAAATCTCAAATATCTAATGATGCTGAAGACTGTTCTTCGGATGCTGCTGGTGGTACATTTGACGAGGCACTACCTGAAATTGAAGCACGATTTTGTGAAAGAAATGTCCTCATAAGAGTACACTGTGAGAAGAATAAAGGAGTTGTAGAAAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATACCAGTGCCTTGACATTTGGGAGTTTTGCCCTTGATATAACCATTATTGCTCAGATGGATACGGAATTTTGCATGAAAGTGAAGGATCTTGTGAGAAACCTACGCTCAGCTTATTCATCTTTCATGTGA 1029 0.4101 MEISSTRGLTELGIIEDPNFLHQWHLSSIDTSSLTSATLGETLQKYSFSNDPNFNPKTSMETSPTGIERPAKQLKNNSWNHNKSPQTSETQFDSCSNLLSFVDLNYTSQLGLVKPKVEMVCPKMDYTTPADMLISQGTLENQNYVFKTCHEAKKTGTRPKLSQHHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQKRKKTVESVVIVKKSQISNDAEDCSSDAAGGTFDEALPEIEARFCERNVLIRVHCEKNKGVVEKTISEIEKLHLKVINTSALTFGSFALDITIIAQMDTEFCMKVKDLVRNLRSAYSSFM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3020g00044 342 Coils Coil 201 228 - -
Gabi3020g00044 342 Gene3D - 155 227 IPR036638 GO:0046983
Gabi3020g00044 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 225 IPR036638 GO:0046983
Gabi3020g00044 342 SMART finulus 168 217 IPR011598 GO:0046983
Gabi3020g00044 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Gabi3020g00044 342 PANTHER BHLH TRANSCRIPTION FACTOR 34 339 - -
Gabi3020g00044 342 CDD bHLH_AtNAI1_like 166 237 - -
Gabi3020g00044 342 Pfam Helix-loop-helix DNA-binding domain 166 212 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3020g00044 Gabi-Chr3020 351405 354683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3020g00044 1 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.665 1.33e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3020g00044 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3020g00044 - - gmx:100798018 548.51